Publications

For publications prior to 2018, please see individual faculty & staff profiles.

2024
2023
2022
2021
2020
2019
2018
  1. Ziman B, Yang Q, Zheng Y, Sheth M, Nam C, Zhao H, Zhang L, Hu B, Bhowmick NA, Sinha UK, Lin DC*. Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell Death Dis. 2024 Feb 19;15(2):152. PMID: 38373993.
  2. Stanton E, Feng J, Kondra K, Sanchez J, Jimenez C, Brown KS, Skiles ML, Urata MM, Chai Y, Hammoudeh JA. A Calvarial Defect Model to Investigate the Osteogenic Potential of Umbilical Cord Stem Cells in Bone Regeneration. Plast Reconstr Surg. 2024 Mar 1;153(3):637-646. doi: 10.1097/PRS.0000000000010754. Epub 2023 May 24. PMID: 37224290.
  3. Pei F, Ma L, Guo T, Zhang M, Jing J, Wen Q, Feng J, Lei J, He J, Janečková E, Ho TV, Chen JF, Chai Y. Sensory nerve regulates progenitor cells via FGF-SHH axis in tooth root morphogenesis. Development. 2024 Jan 15;151(2):dev202043. doi: 10.1242/dev.202043. Epub 2024 Jan 11. PMID: 38108472.
  4. Zhang W, Zhang M, Ma L, Jariyasakulroj S, Chang Q, Lin Z, Lu Z, Chen JF. (2024) Recapitulating and reversing human brain ribosomopathy defects via the maladaptive integrated stress response. Science Advances. Accepted.
  1. Zhang M, Feng J, Li Y, Qin PZ, Chai Y. Generation of tamoxifen-inducible Tfap2b-CreERT2 mice using CRISPR-Cas9. Genesis. 2023 Dec 8:e23582. doi: 10.1002/dvg.23582. Epub ahead of print. PMID: 38069547.
  2. Ma L, Wang F, Li Y, Wang J, Chang Q, Du Y, Sadan J, Zhao Z, Fan G, Yao B, Chen JF. (2023) Brain methylome remodeling selectively regulates neuronal activity genes linking to emotional behaviors in mice exposed to maternal immune activation. Nat Commun. 2023 Nov 29;14(1):7829. doi: 10.1038/s41467-023-43497-4. PMID: 38030616; PMCID: PMC10687003
  3. Jariyasakulroj S, Zhang W, Bai J, Zhang M, Lu Z, Chen JF. (2023) Ribosome biogenesis controls cranial suture MSC fate via the complement pathway in mouse and human iPSC models. Stem Cell Reports. 2023 Dec 12;18(12):2370-2385. doi: 10.1016/j.stemcr.2023.10.015. Epub 2023 Nov 16. PMID: 37977145; PMCID: PMC10724072
  4. Park, Y.M., Lin, DC. Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics. Nat Commun 14, 7017 (2023). https://doi.org/10.1038/s41467-023-42960-6
  5. Ma, L., Chang, Q., Pei, F., Liu, M., Zhang, W., Hong, Y-K., Chai, Y., Chen, JF. Skull progenitor cell-driven meningeal lymphatic restoration improves neurocognitive functions in craniosynostosis, Cell Stem Cell (2023), https://doi.org/10.1016/j.stem.2023.09.012
  6. Zheng, Y., Ziman, B., Ho, A. S., Sinha, U. K., Xu, L.-Y., Li, E.-M., Koeffler, H. P., Berman, B. P., & Lin, D.-C. (2023) Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation. Genome Biology, 2023 Aug 24;24(1):193. doi: 10.1186/s13059-023-03035-3. PMID: 37620896.
  7. Lin DC. Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nat Commun, Feb 17; (2023) 14:893. PMID: 36807265.
  8. Jing J, Zhang M, Guo T, Pei F, Yang Y, and Chai Y. (2022) Rodent incisor as a model to study mesenchymal stem cells in tissue homeostasis and repair. Front. Dent. Med, 30 November 2022, Volume 3 – 2022. https://doi.org/10.3389/fdmed.2022.1068494
  9. Zhou Y, Fyrner T, Chen, CH, Sather NA, Hsu EL, Stupp SI, Snead ML. (2023) Optimization of peptide amphiphile-lipid raft interaction by changing peptide amphiphile lipophilicity. Acta Biomaterialia, in press.
  10. Sinha UK, Lin DC. A novel role of master regulator transcription factor in anti-tumor immunity and cancer immunotherapy. Theranostics 2023; 13(6):1823-1825. doi:10.7150/thno.83486.
  11. Liu, M., Shao, J., Zhao, Y., Ma, B., & Ge, S. (2023). Porphyromonas gingivalis Evades Immune Clearance by Regulating Lysosome Efflux. Journal of Dental Research, 00220345221146097.
  12. Janečková E, Feng J, Guo T, Han X, Ghobadi A, Araujo-Villalba A, Rahman MS, Ziaei H, Ho TV, Pareek S, Alvarez J, Chai Y. Canonical Wnt signaling regulates soft palate development by mediating ciliary homeostasis. Development. 2023 Mar 1;150(5):dev201189. doi: 10.1242/dev.201189. Epub 2023 Mar 9. PMID: 36825984; PMCID: PMC10108707.
  13. Kegulian NC, Langen R, Moradian-Oldak J. The Dynamic Interactions of a Multitargeting Domain in Ameloblastin Protein with Amelogenin and Membrane. International Journal of Molecular Sciences. 2023; 24(4):3484. https://doi.org/10.3390/ijms24043484.
  14. Pei F, Ma L, Jing J, Feng J, Yuan Y, Guo T, Han X, Ho TV, Lei J, He J, Zhang M, Chen JF, Chai Y. Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis. Nat Commun. 2023 Jan 20;14(1):344. doi: 10.1038/s41467-023-35977-4. PMID: 36670126; PMCID: PMC9859800.
  1. Ko, Y.  K., Hong, S., Kim, H. M., Liu, M., Moon, E., Kim, P., & Choi, Y. (2022). Characterization of junctional structures in the gingival epithelium as barriers against bacterial invasion. Journal of periodontal research, 58(4), 799-810.

  2. Liu, M., Won Lee, J., Jung, S., Ji, S., & Choi, Y. (2020). Ability of S100 proteins and matrix metalloproteinase-9 to identify periodontitis in a ligature-induced periodontitis dog model. Journal of clinical periodontology, 47(2), 182-192.

  3. Liu, M., & Choi, Y. (2022). A muring periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium. Journal of periodontal & implant science, 52(2), 141-154.

  4. Zhao, Y., Shi, Y., Yang, H., Liu, M., Shen, L., Zhang, S., Liu, Y., Zhu, J., Lan, J., Li, J., & Ge, S. (2022). Stem cell microencapsulation maintains stemness in inflammatory microenvironment. International journal of oral science, 14 (1), 48.

  5. Visakan G, Bapat RA, Su J, Moradian-Oldak J. (2022) Modeling ameloblast-matrix interactions using 3D cell culture. Front Physiol. 2022;12:1069519. Published 2022 Dec 1. doi:10.3389/fphys.2022.1069519.

  6. Feng J, Han X, Yuan Y, Cho CK, Janečková E, Guo T, Pareek S, Rahman MS, Zheng B, Bi J, Jing J, Zhang M, Xu J, Ho TV, Chai Y. TGF-β signaling and Creb5 cooperatively regulate Fgf18 to control pharyngeal muscle development. Elife. 2022 Dec 21;11:e80405. doi: 10.7554/eLife.80405. PMID: 36542062; PMCID: PMC9771365. 

  7. Zhao H, Cheng Y, Kalra A, Ma K, Zheng Y, Ziman B, Tressler C, Glunde K, Shin EJ, Ngamruengphong S, Khashab M, Singh V, Anders RA, Jit S, Wyhs N, Chen W, Li X, Lin DC, Meltzer SJ. Generation and multiomic profiling of a TP53/CDKN2A double-knockout gastroesophageal junction organoid model. Sci Transl Med. 2022 Nov 30;14(673):eabq6146. doi: 10.1126/scitranslmed.abq6146. Epub 2022 Nov 30. PMID: 36449602.

  8. Lin, D.-C (2022). Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature Communications, in press.

  9. Stanton, E., Feng, J., Kondra, K., Sanchez, J., Jimenez, C., Brown, K.S., Skiles, M., Urata, M., Chai, Y., and Hammoudeh, J.A. (2022) A murine calvarial defect model for the investigation of the osteogenic potential of newborn umbilical cord mesenchymal stem cells in bone regeneration. Plastic and Reconstructive Surgery, in press. 

  10. Sinha, U. K., Kast, W. M., & Lin, D. (2022). Single-cell genomics identifies immune response to neoadjuvant chemoradiotherapy. eBioMedicine, 86, 104389. doi:10.1016/j.ebiom.2022.104389

  11. Stanton E, Sheridan S, Urata M, Chai Y. From Bedside to Bench and Back: Advancing Our Understanding of the Pathophysiology of Cleft Palate and Implications for the Future. Cleft Palate Craniofac J. 2022 Dec 1:10556656221142098. doi: 10.1177/10556656221142098. Epub ahead of print. PMID: 36457208. 

  12. Ma L, Liang C, Wang J, Chang Q, Wang Y, Zhang W, Du Y, Sadan J, Chen JF. (2022) Reversing lysosome-ribosome circuit dysregulation mitigates C9FTD/ALS neurodegeneration and behaviors. Human Molecular Genetics, accepted.

  13. Zhao H, Collet C, Peng D, Sinha UK, Lin DC. (2022) Investigation of early neoplastic transformation and premalignant biology using genetically engineered organoid models. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2022.09.026

  14. Nam C, Ziman B, Sheth M, Zhao H, Lin DC. Genomic and Epigenomic Characterization of Tumor Organoid Models. Cancers (Basel). 2022 Aug 24;14(17):4090. doi: 10.3390/cancers14174090. PMID: 36077628; PMCID: PMC9454968.

  15. Jing J, Feng J, Yuan Y, Guo T, Lei J, Pei F, Ho TV, Chai Y. Spatiotemporal single-cell regulatory atlas reveals neural crest lineage diversification and cellular function during tooth morphogenesis. Nat Commun. 2022 Aug 16;13(1):4803. doi: 10.1038/s41467-022-32490-y. PMID: 35974052; PMCID: PMC9381504. 

  16. Gu R, Zhang S, Saha SK, Ji Y, Reynolds K, McMahon M, Sun B, Islam M, Trainor PA, Chen Y, Xu Y, Chai Y, Burkart-Waco D, Zhou CJ. Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts. Development. 2022 Jul 15;149(14):dev200533. doi: 10.1242/dev.200533. Epub 2022 Jul 22. PMID: 35781558; PMCID: PMC9382898. 

  17. Schuler RE, Bugacov A, Hacia JG, Ho TV, Iwata J, Pearlman L, Samuels BD, Williams C, Zhao Z, Kesselman C, Chai Y. FaceBase: A Community-Driven Hub for Data-Intensive Research. J Dent Res. 2022 Oct;101(11):1289-1298. doi: 10.1177/00220345221107905. Epub 2022 Jul 31. PMID: 35912790; PMCID: PMC9516628.

  18. Liu, N., Chen, S., Geng, D., Lei, J., Zhang, J., Li, L., Lin, Y., Ouyang, Y., Shkhyan, R., Van Handel, B., Bian, F., Mkaratigwa, T., Chai, Y. and Evseenko, D. (2022) Local Drug-Induced Modulation of gp130 Receptor Signaling Delays Disease Progression in a Pig Model of Temporo-Mandibular Joint Osteoarthritis. Front. Dent. Med. 3:937819. doi: 10.3389/fdmed.2022.937819.

  19. Devine J, Vidal-García M, Liu W, Neves A, Lo Vercio LD, Green RM, Richbourg HA, Marchini M, Unger CM, Nickle AC, Radford B, Young NM, Gonzalez PN, Schuler RE, Bugacov A, Rolian C, Percival CJ, Williams T, Niswander L, Calof AL, Lander AD, Visel A, Jirik FR, Cheverud JM, Klein OD, Birnbaum RY, Merrill AE, Ackermann RR, Graf D, Hemberger M, Dean W, Forkert ND, Murray SA, Westerberg H, Marcucio RS, Hallgrímsson B. (2022) MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Sci Data. 2022 May 25;9(1):230. doi: 10.1038/s41597-022-01338-x. PMID: 35614082; PMCID: PMC9133120.

  20. Brugmann, S. A., Merrill, A. E., Saint-Jeannet, J.-P, Stottmann, R. W., & Clouthier, D. E. (2022) The Society for Craniofacial Genetics and Developmental Biology 44th Annual Meeting. American Journal of Medical Genetics. 188(7):2258-2266. doi:10.1002/ajmg.a.62731.

  21. Bauza Nowotny E, Lyons PJ, and Gonzalez-Socoloske D. (2022). Identification of the Eastern Massasauga Rattlesnake (Sistrurus catenatus) through genetic analysis of shed skin. Conservation Genet Resour. doi.org/10.1007/s12686-022-01274-3

  22. Woolfolk SK, Cloyd AK, Ye Q, Boone K, Spencer P, Snead ML, Tamerler C. (2022) Peptide-Enabled Nanocomposites Offer Biomimetic Reconstruction of Silver Diamine Fluoride-Treated Dental Tissues. Polymers. (Basel). 2022 Mar 28;14(7):1368. doi:10.3390/polym14071368. PMID: 35406242; PMCID: PMC9002525.

  23. Stanton E, Urata M, Chen JF, Chai Y. (2022) The clinical manifestations, molecular mechanisms, and treatment of craniosynostosis. Dis Model Mech. 2022 Apr 1;15(4):dmm049390. doi: 10.1242/dmm.049390. Epub 2022 Apr 22. PMID: 35451466; PMCID: PMC9044212.

  24. Guo T, Han X, He J, Feng J, Jing J, Janeckova E, Lei J, Ho T-V, Xu J, Chai Y. (2022) KDM6B interacts with TFDP1 to activate P53 signaling in regulating mouse palatogenesis. eLife. 2022 Feb 25;11:e74595. doi: 10.7554/eLife.74595. PMID: 35212626; PMCID: PMC9007587.

  25. Shao C, Bapat RA, Su J, Moradian-Oldak J. (2022) Regulation of Hydroxyapatite Nucleation In Vitro through Ameloblastin-Amelogenin Interactions. ACS Biomater Sci Eng. 2022 Jan 24. doi: 10.1021/acsbiomaterials.1c01113. Epub ahead of print. PMID: 35068157.

  26. Lei J, Chen S, Jing J, Guo T, Feng J, Ho TV, Chai Y. (2022) Inhibiting Hh signaling in Gli1+ osteogenic progenitors alleviates TMJOA. J Dent Res. 2022 Jan 20;220345211059079. doi: 10.1177/00220345211059079. PMID:35045740.

  27. Zhao H, Wu W, Li X, Chen W. (2022) Long noncoding RNA UCA1 promotes glutamine-driven anaplerosis of bladder cancer by interacting with hnRNP I/L to upregulate GPT2 expression.Transl Oncol. 2022 Jan 10;17:101340. doi:10.1016/j.tranon.2022.101340. Epub ahead of print. PMID: 35021150; PMCID:PMC8752948.

  28. Ting MC, Farmer DT, Teng CS, He J, Chai Y, Crump JG, Maxson RE. (2022) Embryonic requirements for Tcf12 in the development of the mouse coronal suture. Development. 2022 Jan 1;149(1):dev199575. doi: 10.1242/dev.199575. Epub 2022 Jan 4. PMID: 34878091; PMCID: PMC8783042.

  29. Visakan G, Su J, Moradian-Oldak J. (2022) Ameloblastin promotes polarization of ameloblast cell lines in a 3-D cell culture system. Matrix Biol. 2022 Jan;105:72-86. doi: 10.1016/j.matbio.2021.11.002. Epub 2021 Nov 20. PMID:34813898; PMCID: PMC8955733.

  30. Kim DY, Nam J, Chung JS, Kim SW, Shin HJ. (2022) Role of Roflumilast Combined with ESHAP Chemotherapy in Relapsed/Refractory Patients with Diffuse Large B-Cell Lymphoma. Cancer Res Treat. 2022 Jan;54(1):301-313. doi: 10.4143/crt.2020.1371. Epub 2021 Apr 27. PMID: 33940789; PMCID: PMC8756117.

  1. Geng S, Lei Y, Snead ML. (2021) Minimal amelogenin domain for enamel formation. JOM(1989). 2021 Jun;73(6):1696-1704. doi: 10.1007/s11837-021-04687-x. Epub 2021 May 7. PMID: 34456537; PMCID: PMC8386916.

  2. Dinh H.Q, Pan F, Wang G, Q Huang, C Olingy, Z Wu, S Wang, X Xu, X Xu, J He, Q Yang, S Orsulic, M Haro, L Li, G Huang, J Breunig, H Koeffler, C Hedrick, L Xu, Lin DC, E Li. (2021) Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment. Nat Commun. 2021 Dec 17;12(1):7335. doi: 10.1038/s41467-021-27599-5. PMID: 34921160; PMCID: PMC8683407.

  3. Liu M, Choi Y.(2021) A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium. J Periodontal Implant Sci. 2021;51:e47.

  4. Ho AS, Robinson A, Shon W, Laury A, Raedschelders K, Venkatraman V, Holewinski R, Zhang Y, Shiao SL, Chen MM, Mallen-St Clair J, Lin DC, Zumsteg ZS, Van Eyk JE. (2021) Comparative Proteomic Analysis of HPV(+) Oropharyngeal Squamous Cell Carcinoma Recurrence. J Proteome Res. 2021 Nov 30. doi: 10.1021/acs.jproteome.1c00757. Epub ahead of print. PMID: 34846153.

  5. Ho AS, Luu M, Shafqat I, Mallen-St Clair J, Chen MM, Chen Y, Jain M, Ali N, Patio C, Filarski CF, Lin DC, Bankston H, Braunstein GD, Sacks WL, Zumsteg ZS.(2021) Predictive Impact of Metastatic Lymph Node Burden on Distant Metastasis Across Papillary Thyroid Cancer Variants. Thyroid. 2021 Oct;31(10):1549-1557. doi:10.1089/thy.2021.0131. PMID: 34470466.

  6. Xu J, Richard S. (2021) Cellular pathways influenced by protein arginine methylation: Implications for cancer. Mol Cell. 2021 Nov 4;81(21):4357-4368. doi: 10.1016/j.molcel.2021.09.011. Epub 2021 Oct 6. PMID: 34619091; PMCID:PMC8571027.

  7. Lin DC. (2021) A closer look at esophageal cancer through different lenses. EBioMedicine. 2021 Sep;71:103545. doi: 10.1016/j.ebiom.2021.103545. Epub 2021 Aug 19. PMID: 34419929; PMCID: PMC8385164.

  8. Farmer DT, Mlcochova H, Zhou Y, Koelling N, Wang G, Ashley N, Bugacov H, Chen HJ, Parvez R, Tseng KC, Merrill AE, Maxson RE Jr, Wilkie AOM, Crump JG, Twigg SRF. (2021) The developing mouse coronal suture at single-cell resolution. Nat Commun. 2021 Aug 10;12(1):4797. doi: 10.1038/s41467-021-24917-9. PMID: 34376651; PMCID:PMC8355337.

  9. Qin J, Xu J. (2021) Arginine methylation in the epithelial-to-mesenchymal transition. FEBS J. 2021 Aug 6. doi: 10.1111/febs.16152. Epub ahead of print. PMID: 34358413.

  10. Stucky A, Gao L, Sun L, Li SC, Chen X, Park TH, Cai J, Kabeer MH, Zhang X, Sinha UK, Zhong JF. (2021) Evidence for AJUBA-catenin-CDH4-linked differentiation resistance of mesenchymal stem cells implies tumorigenesis and progression of head and neck squamous cell carcinoma: a single-cell transcriptome approach. Blood Genom. 2021;5(1):29-39. doi: 10.46701/BG.2021012021106. PMID: 34368804; PMCID: PMC8346230.

  11. Li LY, Yang Q, Jiang YY, Yang W, Jiang Y, Li X, Hazawa M, Zhou B, Huang GW, Xu XE, Gery S, Zhang Y, Ding LW, Ho AS, Zumsteg ZS, Wang MR, Fullwood MJ, Freedland SJ, Meltzer SJ, Xu LY, Li EM, Koeffler HP, Lin DC. (2021) Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer. Nat Commun. 2021 Jul 16;12(1):4362. doi: 10.1038/s41467-021-24656-x. PMID: 34272396; PMCID:PMC8285542.

  12. Zheng Y, Huang G, Silva TC, Yang Q, Jiang YY, Koeffler HP, Lin DC, Berman BP.(2021) A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes. Nat Commun. 2021 Apr 30;12(1):2485. doi:10.1038/s41467-021-22720-0. Erratum in: Nat Commun. 2021 Jun 28;12(1):4106.PMID: 33931649; PMCID: PMC8087678.

  13. Moradian-Oldak J, George A. (2021) Biomineralization of Enamel and Dentin Mediated by Matrix Proteins. J Dent Res. 2021 Sep;100(10):1020-1029. doi:10.1177/00220345211018405. Epub 2021 Jun 21. PMID: 34151644; PMCID: PMC8381691.

  14. Mukherjee K, Chakraborty A, Sandhu G, Naim S, Bauza Nowotny E, Moradian-Oldak J. (2021) Amelogenin Peptide-Chitosan Hydrogel for Biomimetic Enamel Regrowth. Front. Dent. Med. 2:697544. doi: 10.3389/fdmed.2021.697544

  15. Ma L, Wang J, Ge J, Wang Y, Zhang W, Du Y, Luo J, Li Y, Wang F, Fan G, Chen R, Yao B, Zhao Z, Guo ML, Kim WK, Chai Y, Chen JF. (2021) Reversing neural circuit and behavior deficit in mice exposed to maternal inflammation by Zika virus. EMBO Rep. 2021 Aug 4;22(8):e51978. doi: 10.15252/embr.202051978. Epub 2021 Jul 7. PMID: 34232545; PMCID: PMC8344882.

  16. Lin DC. (2021) Exercise impacts the epigenome of cancer. Prostate Cancer Prostatic Dis. 2021 May 27. doi: 10.1038/s41391-021-00396-3. Epub ahead of print. PMID: 34045658.

  17. Jiang Y, Jiang YY, Lin DC. (2021) Super-enhancer-mediated core regulatory circuitry in human cancer.Comput Struct Biotechnol J. 2021 May 5;19:2790-2795. doi:10.1016/j.csbj.2021.05.006. PMID: 34093993; PMCID: PMC8138668.

  18. Wu Y, Wu H, Zeng J, Pluimer B, Dong S, Xie X, Guo X, Ge T, Liang X, Feng S, Yan Y, Chen JF, Sta Maria N, Ma Q, Gomez-Pinilla F, Zhao Z. (2021) Mild traumatic brain injury induces microvascular injury and accelerates Alzheimer-like pathogenesis in mice. Acta Neuropathol Commun. 2021 Apr 23;9(1):74. doi:10.1186/s40478-021-01178-7. PMID: 33892818; PMCID: PMC8063402.

  19. Bobzin L, Roberts RR, Chen HJ, Crump JG, Merrill AE. (2021) Development and maintenance of tendons and ligaments. Development. 2021 Apr 15;148(8):dev186916. doi: 10.1242/dev.186916. Epub 2021 Apr 16. PMID: 33913478; PMCID: PMC8077520.

  20. Du J, Jing J, Chen S, Yuan Y, Feng J, Ho TV, Sehgal P, Xu J, Jiang X, Chai Y.(2021) Arid1a regulates cell cycle exit of transit-amplifying cells through inhibiting the Aurka-Cdk1 axis in mouse incisor. Development. 2021 Apr 15;148(8):dev198838. doi: 10.1242/dev.198838. Epub 2021 Apr 16. PMID: 33766930; PMCID: PMC8077510.

  21. Du J, Jing J, Yuan Y, Feng J, Han X, Chen S, Li X, Peng W, Xu J, Ho TV, Jiang X, Chai Y. (2021) Arid1a-Plagl1-Hh signaling is indispensable for differentiation-associated cell cycle arrest of tooth root progenitors. Cell Rep. 2021 Apr 6;35(1):108964. doi: 10.1016/j.celrep.2021.108964. PMID: 33826897; PMCID:PMC8132592.

  22. Davidian D, Ziman B, Escobar AL, Oviedo NJ. (2021) Direct Current Electric Stimulation Alters the Frequency and the Distribution of Mitotic Cells in Planarians. Bioelectricity. 2021 Mar 1;3(1):77-91. doi: 10.1089/bioe.2020.0026. Epub 2021 Mar 16. PMID: 34476379; PMCID: PMC8370485.

  23. Johnson ZM, Yuan Y, Li X, Jashashvili T, Jamieson M, Urata M, Chen Y, Chai Y.(2021) Mesenchymal stem cells and three-dimensional-osteoconductive scaffold regenerate calvarial bone in critical size defects in swine. Stem Cells Transl Med. 2021 Aug;10(8):1170-1183. doi: 10.1002/sctm.20-0534. Epub 2021 Apr 1. PMID: 33794062; PMCID: PMC8284781.

  24. Wu J, Chen X, Sehgal P, Zhang T, Jackson-Weaver O, Gou Y, Bautch V, Frenkel B, Sun H, Xu J. (2021) Arginine methylation of R81 in Smad6 confines BMP-induced Smad1 signaling. J Biol Chem. 2021 Mar 2;296:100496. doi: 10.1016/j.jbc.2021.100496. Epub ahead of print. PMID: 33667543; PMCID: PMC8050389.

  25. Ho AS, Luu M, Kim S, Tighiouart M, Mita AC, Scher KS, Mallen-St Clair J, Walgama ES, Lin DC, Nguyen AT, Zumsteg ZS. (2021) Nodal staging convergence for HPV-and HPV+ oropharyngeal carcinoma. Cancer. 2021 May 15;127(10):1590-1597. doi:10.1002/cncr.33414. Epub 2021 Feb 17. PMID: 33595897.

  26. Guo Z, Pan F, Peng L, Tian S, Jiao J, Liao L, Lu C, Zhai G, Wu Z, Dong H, Xu X, Wu J, Chen P, Bai X, Lin D, Xu L, Li E, Zhang K. (2021) Systematic Proteome and Lysine Succinylome Analysis Reveals the Enhanced Cell Migration by Hyposuccinylation in Esophageal Squamous Cell Cancer. Mol Cell Proteomics. 2021 Feb 6;20:100053. doi: 10.1074/mcp.RA120.002150. Epub ahead of print. PMID:33561546; PMCID: PMC7970140.

  27. He J, Jing J, Feng J, Han X, Yuan Y, Guo T, Pei F, Ma Y, Cho C, Ho TV, Chai Y. (2021) Lhx6 regulates canonical Wnt signaling to control the fate of mesenchymal progenitor cells during mouse molar root patterning. PLoS Genet. 2021 Feb 17;17(2):e1009320. doi: 10.1371/journal.pgen.1009320. PMID: 33596195; PMCID: PMC7920342.

  28. Han X, Feng J, Guo T, Loh YE, Yuan Y, Ho TV, Cho CK, Li J, Jing J, Janeckova E, He J, Pei F, Bi J, Song B, Chai Y. (2021) Runx2-Twist1 interaction coordinates cranial neural crest guidance of soft palate myogenesis. Elife. 2021 Jan 22;10:e62387. doi: 10.7554/eLife.62387. PMID: 33482080; PMCID: PMC7826157.

  29. Maciel EI, Valle Arevalo A, Ziman B, Nobile CJ, Oviedo NJ. (2021) Epithelial Infection With Candida albicans Elicits a Multi-System Response in Planarians. Front Microbiol. 2021 Jan 14;11:629526. doi: 10.3389/fmicb.2020.629526. PMID: 33519792; PMCID: PMC7840899.

  30. Ziman B, Oviedo NJ. (2021) Measuring protein levels in planarians using western blotting. STAR Protoc. 2021 Jan 14;2(1):100274. doi: 10.1016/j.xpro.2020.100274. PMID: 33490988; PMCID: PMC7811048.

  31. Yu M, Ma L, Yuan Y, Ye X, Montagne A, He J, Ho TV, Wu Y, Zhao Z, Sta Maria N, Jacobs R, Urata M, Wang H, Zlokovic BV, Chen JF, Chai Y. (2021) Cranial Suture Regeneration Mitigates Skull and Neurocognitive Defects in Craniosynostosis. Cell. 2021 Jan 7;184(1):243-256.e18. doi: 10.1016/j.cell.2020.11.037. PMID: 33417861; PMCID: PMC7891303.

  32. Ma S, Zhou B, Yang Q, Pan Y, Yang W, Freedland SJ, Ding LW, Freeman MR, Breunig JJ, Bhowmick NA, Pan J, Koeffler HP, Lin DC. (2021) A Transcriptional Regulatory Loop of Master Regulator Transcription Factors, PPARG, and Fatty Acid Synthesis Promotes Esophageal Adenocarcinoma. Cancer Res. 2021 Mar 1;81(5):1216-1229. doi: 10.1158/0008-5472.CAN-20-0652. Epub 2021 Jan 5. PMID:33402390; PMCID: PMC8026506.

  33. Jing J, Feng J, Li J, Zhao H, Ho TV, He J, Yuan Y, Guo T, Du J, Urata M, Sharpe P, Chai Y.(2021) Reciprocal interaction between mesenchymal stem cells and transit amplifying cells regulates tissue homeostasis. Elife. 2021 Jan22;10:e59459. doi: 10.7554/eLife.59459. PMID: 33480845; PMCID: PMC7822593.

  34. Goel P, Fahradyan A, Wolfswinkel EM, Jacob L, Yen SL, Urata MM, Hammoudeh JA.(2021) Is Le Fort I Distraction Enough to Treat Severe Midface Hypoplasia? J Craniofac Surg. 2021 Jul-Aug 01;32(5):1716-1720. doi: 10.1097/SCS.0000000000007448. PMID:33464771.

  35. Cai J, Burrow MF, Manton DJ, Hardiman R, Palamara JEA. (2021) Remineralising effects of fluoride varnishes containing calcium phosphate on artificial root caries lesions with adjunctive application of proanthocyanidin. Dent Mater. 2021 Jan;37(1):143-157. doi: 10.1016/j.dental.2020.10.021. Epub 2020 Nov 29. PMID: 33267974.

  36. Huang Y, Ling A, Pareek S, Huang RS. (2021) Oncogene or tumor suppressor? Long noncoding RNAs role in patient`s prognosis varies depending on disease type. Transl Res. 2021 Apr;230:98-110. doi: 10.1016/j.trsl.2020.10.011. Epub 2020 Nov 2. PMID: 33152534; PMCID: PMC7936950.

  37. Zhang M, Li K, Bai J, Velema WA, Yu C, van Damme R, Lee WH, Corpuz ML, Chen JF, Lu Z. (2021) Optimized photochemistry enables efficient analysis of dynamic RNA structuromes and interactomes in genetic and infectious diseases. Nat Commun. 2021 Apr 20;12(1):2344. doi: 10.1038/s41467-021-22552-y. PMID: 33879794; PMCID:PMC8058046.

  1. Ruspita I, Das P, Xia Y, Kelangi S, Miyoshi K, Noma T, Snead ML, D'Souza RN, Bei M. (2020) An Msx2-Sp6-Follistatin Pathway Operates During Late Stages of Tooth Development to Control Amelogenesis. Front Physiol. 2020 Oct 26;11:582610. doi: 10.3389/fphys.2020.582610. PMID: 33192593; PMCID: PMC7649293.

  2. Liu Q, Hu Y, Stucky A, Fang L, Zhong JF, Wang K. (2020) LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing. BMC Genomics. 2020 Dec 29;21(Suppl 11):793. doi: 10.1186/s12864-020-07207-4. PMID: 33372596; PMCID: PMC7771079.

  3. Bapat RA, Su J, Moradian-Oldak J. (2020)bCo-Immunoprecipitation Reveals Interactions Between Amelogenin and Ameloblastin via Their Self-Assembly Domains. Front Physiol. 2020 Dec 23;11:622086. doi: 10.3389/fphys.2020.622086. PMID: 33424645; PMCID: PMC7786100.

  4. Yuan Y, Loh YE, Han X, Feng J, Ho TV, He J, Jing J, Groff K, Wu A, Chai Y.(2020) Spatiotemporal cellular movement and fate decisions during first pharyngeal arch morphogenesis. Sci Adv. 2020 Dec 16;6(51):eabb0119. doi: 10.1126/sciadv.abb0119. PMID: 33328221; PMCID: PMC7744069.

  5. Ma Y, Jing J, Feng J, Yuan Y, Wen Q, Han X, He J, Chen S, Ho TV, Chai Y.(2020) Ror2-mediated non-canonical Wnt signaling regulates Cdc42 and cell proliferation during tooth root development. Development. 2021 Jan 21;148(2):dev196360. doi:10.1242/dev.196360. PMID: 33323370; PMCID: PMC7847279.

  6. Li B, Niswander LA. (2020) TMEM132A, a Novel Wnt Signaling Pathway Regulator Through Wntless (WLS) Interaction. Front Cell Dev Biol. 2020 Nov 26;8:599890. doi:10.3389/fcell.2020.599890. PMID: 33324648; PMCID: PMC7726220.

  7. Shi X, Zheng Y, Jiang L, Zhou B, Yang W, Li L, Ding L, Huang M, Gery S, Lin DC, Koeffler HP. (2020) EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma. Nucleic Acids Res. 2020 Nov 18;48(20):11434-11451. doi: 10.1093/nar/gkaa901. PMID: 33080033; PMCID: PMC7672457.

  8. Zhong EF, Chang A, Stucky A, Chen X, Mundluru T, Khalifeh M, Sedghizadeh PP.(2020) Genomic Analysis of Oral Lichen Planus and Related Oral Microbiome Pathogens. Pathogens. 2020 Nov 16;9(11):952. doi: 10.3390/pathogens9110952. PMID: 33207582; PMCID: PMC7697643.

  9. Horie M, Castaldi A, Sunohara M, Wang H, Ji Y, Liu Y, Li F, Wilkinson TA, Hung L, Shen H, Kage H, Offringa IA, Marconett CN, Flodby P, Zhou B, Borok Z.(2020) Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker. Cells. 2020 Nov 11;9(11):2460. doi: 10.3390/cells9112460. PMID:33187367; PMCID: PMC7697677.

  10. Fan Z, He L, Li M, Cao R, Deng M, Ping F, Liang X, He Y, Wu T, Tao X, Xu J, Cheng B, Xia J. (2020) Targeting methyltransferase PRMT5 retards the carcinogenesis and metastasis of HNSCC via epigenetically inhibiting Twist1 transcription. Neoplasia. 2020 Nov;22(11):617-629. doi: 10.1016/j.neo.2020.09.004. Epub 2020 Oct 10. PMID: 33045527; PMCID: PMC7557877.

  11. Ziman B, Barghouth PG, Maciel EI, Oviedo NJ. (2020) TRAF-like Proteins Regulate Cellular Survival in the Planarian Schmidtea mediterranea. iScience. 2020 Oct 9;23(11):101665. doi: 10.1016/j.isci.2020.101665. PMID: 33134895; PMCID:PMC7586133.

  12. Li X, Shan W, Yang Y, Joralmon D, Zhu Y, Chen Y, Yuan Y, Xu H, Rong J, Dai R, Nian Q, Chai Y, Chen Y.(2020) Limpet Tooth-Inspired Painless Microneedles Fabricated by Magnetic Field-Assisted 3D Printing. Adv. Funct. Mater. 2020, DOI: 10.1002/adfm.202003725.

  13. Zhang M, Zhang W, Zhu X, Sun Q, Yan C, Xu SS, Fiedler J, Cai X. (2020) Dissection and physical mapping of wheat chromosome 7B by inducing meiotic recombination with its homoeologues in Aegilops speltoides and Thinopyrum elongatum. Theor Appl Genet. 2020 Dec;133(12):3455-3467. doi: 10.1007/s00122-020-03680-3. Epub 2020 Sep 15. PMID: 32930833.

  14. Ho AS, Luu M, Barrios L, Balzer BL, Bose S, Fan X, Walgama E, Mallen-St Clair J, Alam U, Shafqat I, Lin DC, Chen Y, Van Eyk JE, Maghami EG, Braunstein GD, Sacks WL, Zumsteg ZS. (2020) Prognostic Impact of Histologic Grade for Papillary Thyroid Carcinoma. Ann Surg Oncol. 2021 Mar;28(3):1731-1739. doi:10.1245/s10434-020-09023-2. Epub 2020 Aug 17. PMID: 32808161.

  15. Samuels BD, Aho R, Brinkley JF, Bugacov A, Feingold E, Fisher S, Gonzalez-Reiche AS, Hacia JG, Hallgrimsson B, Hansen K, Harris MP, Ho TV, Holmes G, Hooper JE, Jabs EW, Jones KL, Kesselman C, Klein OD, Leslie EJ, Li H, Liao EC, Long H, Lu N, etc… Yuan Y, Chai Y. (2020) FaceBase 3: Analytical Tools and FAIR Resources for Craniofacial and Dental Research. Development. 2020 Sep 21;147(18):dev191213. doi: 10.1242/dev.191213. PMID: 32958507; PMCID: PMC7522026.

  16. Zeng J, Dong S, Luo Z, Xie X, Fu B, Li P, Liu C, Yang X, Chen Y, Wang X, Liu Z, Wu J, Yan Y, Wang F, Chen JF, Zhang J, Long G, Goldman SA, Li S, Zhao Z, Liang Q. (2020) The Zika Virus Capsid Disrupts Corticogenesis by Suppressing Dicer Activity and miRNA Biogenesis. Cell Stem Cell. 2020 Oct 1;27(4):618-632.e9. doi: 10.1016/j.stem.2020.07.012. Epub 2020 Aug 6. PMID: 32763144; PMCID: PMC7541724.

  17. Akhter MN, Hara ES, Kadoya K, Okada M, Matsumoto T. (2020) Cellular Fragments as Biomaterial for Rapid In Vitro Bone-Like Tissue Synthesis. Int J Mol Sci. 2020 Jul 27;21(15):5327. doi: 10.3390/ijms21155327. PMID: 32727114; PMCID:PMC7432235.

  18. Chen S, Jing J, Yuan Y, Feng J, Han X, Wen Q, Ho TV, Lee C, Chai Y. (2020) Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling. Cell Rep. 2020 Aug 11;32(6):108007. doi: 10.1016/j.celrep.2020.108007. PMID: 32783935; PMCID: PMC7461627.

  19. Jiang YY, Jiang Y, Li CQ, Zhang Y, Dakle P, Kaur H, Deng JW, Lin RY, Han L, Xie JJ, Yan Y, Doan N, Zheng Y, Mayakonda A, Hazawa M, Xu L, Li Y, Aswad L, Jeitany M, Kanojia D, Guan XY, Said JW, Yang W, Fullwood MJ, Lin DC, Koeffler HP. (2020) TP63, SOX2, and KLF5 Establish a Core Regulatory Circuitry That Controls Epigenetic and Transcription Patterns in Esophageal Squamous Cell Carcinoma Cell Lines. Gastroenterology. 2020 Oct;159(4):1311-1327.e19. doi:10.1053/j.gastro.2020.06.050. Epub 2020 Jun 30. PMID: 32619460.

  20. Wen Q, Jing J, Han X, Feng J, Yuan Y, Ma Y, Chen S, Ho TV, Chai Y. (2020) Runx2 regulates mouse tooth root development via activation of WNT inhibitor Notum. J Bone Miner Res. 2020 Nov;35(11):2252-2264. doi: 10.1002/jbmr.4120. Epub 2020 Aug 3. PMID: 32569388; PMCID: PMC7689689.

  21. Wang QY, Peng L, Chen Y, Liao LD, Chen JX, Li M, Li YY, Qian FC, Zhang YX, Wang F, Li CQ, Lin DC, Xu LY, Li EM. (2020) Characterization of super-enhancer-associated functional lncRNAs acting as ceRNAs in ESCC. Mol Oncol. 2020 Sep;14(9):2203-2230. doi: 10.1002/1878-0261.12726. Epub 2020 Jun 20. PMID:32460441; PMCID: PMC7463357.

  22. Jackson-Weaver O, Ungvijanpunya N, Yuan Y, Qian J, Gou Y, Wu J, Shen H, Chen Y, Li M, Richard S, Chai Y, Sucov HM, Xu J.(2020) PRMT1-p53 Pathway Controls Epicardial EMT and Invasion. Cell Rep. 2020 Jun 9;31(10):107739. doi: 10.1016/j.celrep.2020.107739. PMID: 32521264; PMCID: PMC7425665.

  23. Yu W, Sun Z, Sweat Y, Sweat M, Venugopalan SR, Eliason S, Cao H, Paine ML, Amendt BA.(2020) Pitx2-Sox2-Lef1 interactions specify progenitor oral/dental epithelial cell signaling centers. Development. 2020 Jun 4;147(11):dev186023. doi: 10.1242/dev.186023. PMID: 32439755; PMCID: PMC7286298.

  24. Ziman B, Karabinis P, Barghouth P, Oviedo NJ. (2020) Sirtuin-1 regulates organismal growth by altering feeding behavior and intestinal morphology in planarians. J Cell Sci. 2020 May 27;133(10):jcs239467. doi: 10.1242/jcs.239467. PMID:32265271; PMCID: PMC7272345.

  25. Men Y, Wang Y, Yi Y, Jing D, Luo W, Chai Y, Ge WP, Shen B, Stenberg W, Feng JQ, Zhao H.(2020) Gli1+ periodontium stem cells are regulated by osteocytes and occlusal force. Dev Cell. 2020 Sep 14;54(5):639-654.e6. doi:10.1016/j.devcel.2020.06.006. Epub 2020 Jul 10. PMID: 32652075.

  26. Su J, Bapat RA, Visakan G, Moradian-Oldak J.(2020) An Evolutionarily Conserved Helix Mediates Ameloblastin-Cell Interaction. J Dent Res. 2020 Aug;99(9):1072-1081. doi: 10.1177/0022034520918521. Epub 2020 May 13. PMID:32401578; PMCID: PMC7375739.

  27. Pan J, Silva TC, Gull N, Yang Q, Plummer JT, Chen S, Daigo K, Hamakubo T, Gery S, Ding LW, Jiang YY, Hu S, Xu LY, Li EM, Ding Y, Klempner SJ, Gayther SA, Berman BP, Koeffler HP, Lin DC. (2020) Lineage-Specific Epigenomic and Genomic Activation of Oncogene HNF4A Promotes Gastrointestinal Adenocarcinomas. Cancer Res. 2020 Jul 1;80(13):2722-2736. doi: 10.1158/0008-5472.CAN-20-0390. Epub 2020 Apr 24. PMID: 32332020.

  28. Shim H, Nam J, Kim SW. (2020) NF-κB p65 represses microRNA-124 transcription in diffuse large B-cell lymphoma. Genes Genomics. 2020 May;42(5):543-551. doi:10.1007/s13258-020-00922-y. Epub 2020 Mar 23. PMID: 32207045.

  29. Huang M, Wang Y, Yang M, Yan J, Yang H, Zhuang W, Xu Y, Koeffler HP, Lin DC, Chen X. (2020) dbInDel: a database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq. Bioinformatics. 2020 Mar 1;36(5):1649-1651. doi: 10.1093/bioinformatics/btz770. PMID: 31603498; PMCID:PMC7703781.

  30. Mukherjee K, Visakan G, Phark JH, Moradian-Oldak J.(2020) Enhancing Collagen Mineralization with Amelogenin Peptide: Towards the Restoration of Dentin. ACS Biomater Sci Eng. 2020 Apr 13;6(4):2251-2262. doi:10.1021/acsbiomaterials.9b01774. Epub 2020 Feb 21. PMID: 33313393; PMCID:PMC7725229.

  31. Zhang W, Ma L, Yang M, Shao Q, Xu J, Lu Z, Zhao Z, Chen R, Chai Y, Chen JF.(2020) Cerebral organoid and mouse models reveal a RAB39b-PI3K-mTOR pathway-dependent dysregulation of cortical development leading to macrocephaly/autism phenotypes. Genes Dev. 2020 Apr 1;34(7-8):580-597. doi: 10.1101/gad.332494.119. Epub 2020 Feb 27. PubMed PMID: 32115408; PubMed Central PMCID: PMC7111266.

  32. Zhang M, Zhang W, Zhu X, Sun Q, Chao S, Yan C, Xu SS, Fiedler J, Cai X.(2020) Partitioning and physical mapping of wheat chromosome 3B and its homoeologue 3E in Thinopyrum elongatum by inducing homoeologous recombination. Theor Appl Genet. 2020 Apr;133(4):1277-1289. doi: 10.1007/s00122-020-03547-7. Epub 2020 Jan 22. PMID: 31970450.

  33. Tai JW, Yu H, Chilukuri AT, Bhargava R, Deshpande R, Li W, Ongkeko WM, Bhargava V, Rajasekaran MR. (2020) Characterization of urethral fibrosis in a rabbit model: Potential roles of Wnt-β catenin pathway and epithelial to mesenchymal transition. Neurourol Urodyn. 2020 Feb;39(2):625-632. doi: 10.1002/nau.24281. Epub 2020 Jan 21. PMID: 31961960.

  34. Chen Y, Liao LD, Wu ZY, Yang Q, Guo JC, He JZ, Wang SH, Xu XE, Wu JY, Pan F, Lin DC, Xu LY, Li EM. (2020) Identification of key genes by integrating DNA methylation and next-generation transcriptome sequencing for esophageal squamous cell carcinoma. Aging (Albany NY). 2020 Jan 21;12(2):1332-1365. doi:10.18632/aging.102686. Epub 2020 Jan 21. PMID: 31962291; PMCID: PMC7053602.

  35. Yamada T, Takechi M, Yokoyama N, Hiraoka Y, Ishikubo H, Usami T, Furutera T, Taga Y, Hirate Y, Kanai-Azuma M, Yoda T, Ogawa-Goto K, Iseki S. (2020) Heterozygous mutation of the splicing factor Sf3b4 affects development of the axial skeleton and forebrain in mouse. Dev Dyn. 2020 May;249(5):622-635. doi: 10.1002/dvdy.148. Epub 2020 Jan 14. PMID: 31900962.

  36. Liao JY, Yang B, Zhang YC, Wang XJ, Ye Y, Peng JW, Yang ZZ, He JH, Zhang Y, Hu K, Lin DC, Yin D. (2020) EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs). Nucleic Acids Res. 2020 Jan 8;48(D1):D307-D313. doi: 10.1093/nar/gkz823. PMID: 31598693; PMCID: PMC6943034.

  37. Zhang C, Lin J, Nguyen NT, Guo Y, Xu C, Seo C, Villafana E, Jimenez H, Chai Y, Guan R, Liu H. (2020) Antimicrobial Bioresorbable Mg-Zn-Ca Alloy for Bone Repair in a Comparison Study with Mg-Zn-Sr Alloy and Pure Mg. ACS Biomater Sci Eng. 2020 Jan 13;6(1):517-538. doi: 10.1021/acsbiomaterials.9b00903. Epub 2019 Dec 31. PMID: 33463195; PMCID: PMC8218913.

  38. Shao Q, Yang M, Liang C, Ma L, Zhang W, Jiang Z, Luo J, Lee JK, Liang C, Chen JF. (2020) C9orf72 and smcr8 mutant mice reveal MTORC1 activation due to impaired lysosomal degradation and exocytosis. Autophagy. 2020 Sep;16(9):1635-1650. doi: 10.1080/15548627.2019.1703353. Epub 2019 Dec 26. PMID: 31847700; PMCID: PMC8386604.

  39. Howard LE, Zhang J, Fishbane N, Hoedt AM, Klaassen Z, Spratt DE, Vidal AC, Lin D, Hitchins MP, You S, Freeman MR, Yamoah K, Davicioni E, Freedland SJ.(2020) Validation of a genomic classifier for prediction of metastasis and prostate cancer-specific mortality in African-American men following radical prostatectomy in an equal access healthcare setting. Prostate Cancer Prostatic Dis. 2020 Sep;23(3):419-428. doi: 10.1038/s41391-019-0197-3. Epub 2019 Dec 16. PMID: 31844180.

  40. Hazawa M, Sakai K, Kobayashi A, Yoshino H, Iga Y, Iwashima Y, Lim KS, Chih-Cheng Voon D, Jiang YY, Horike SI, Lin DC, Wong RW. (2020) Disease-specific alteration of karyopherin-a subtype establishes feed-forward oncogenic signaling in head and neck squamous cell carcinoma. Oncogene. 2020 Mar;39(10):2212-2223. doi:10.1038/s41388-019-1137-3. Epub 2019 Dec 10. PMID: 31822798; PMCID: PMC7056645.

  41. Wisdom EC, Zhou Y, Chen C, Tamerler C, Snead ML.(2020) Mitigation of peri-implantitis by rational design of bifunctional peptides with antimicrobial properties. ACS Biomater Sci Eng. 2020 May 11;6(5):2682-2695. doi: 10.1021/acsbiomaterials.9b01213. Epub 2019 Sep 24. PMID: 32467858; PMCID: PMC7255409.

  42. Loh XY, Sun QY, Ding LW, Mayakonda A, Venkatachalam N, Yeo MS, Silva TC, Xiao JF, Doan NB, Said JW, Ran XB, Zhou SQ, Dakle P, Shyamsunder P, Koh AP, Huang RY, Berman BP, Tan SY, Yang H, Lin DC, Koeffler HP. (2020) RNA-Binding Protein ZFP36L1 Suppresses Hypoxia and Cell-Cycle Signaling. Cancer Res. 2020 Jan 15;80(2):219-233. doi: 10.1158/0008-5472.CAN-18-2796. Epub 2019 Sep 24. PMID:31551365.

  43. Chen L, Huang M, Plummer J, Pan J, Jiang YY, Yang Q, Silva TC, Gull N, Chen S, Ding LW, An O, Yang H, Cheng Y, Said JW, Doan N, Dinjens WN, Waters KM, Tuli R, Gayther SA, Klempner SJ, Berman BP, Meltzer SJ, Lin DC, Koeffler HP. (2020) Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma. Gut. 2020 Apr;69(4):630-640. doi: 10.1136/gutjnl-2019-318325. Epub 2019 Aug 13. PMID:31409603; PMCID: PMC8108390.

  1. Nirvani M, Khuu C, Tulek A, Utheim TP, Sand LP, Snead ML, Sehic A. (2019) Transcriptomic analysis of MicroRNA expression in enamel-producing cells. Gene. 2019 Mar 10;688:193-203. doi: 10.1016/j.gene.2018.11.089. Epub 2018 Dec 5. PMID:30529249.

  2. Pareek S, Kurakawa T, Das B, Motooka D, Nakaya S, Rongsen-Chandola T, Goyal N, Kayama H, Dodd D, Okumura R, Maeda Y, Fujimoto K, Nii T, Ogawa T, Iida T, Bhandari N, Kida T, Nakamura S, Nair GB, Takeda K. (2019) Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi. NPJ Biofilms Microbiomes. 2019 Dec 20;5(1):37. doi:10.1038/s41522-019-0110-9. PMID: 31885873; PMCID: PMC6925221.

  3. Li X, Yuan Y, Liu L, Leung YS, Chen Y, Guo Y, Chai Y, Chen Y.(2019) 3D printing of hydroxyapatite/tricalcium phosphate scaffold with hierarchical porous structure for bone regeneration. Bio-Design and Manufacturing, 3, 5–29.

  4. Pareek S, Nath A, Huang RS. (2019) MicroRNA targeting energy metabolism in ovarian cancer: a potent contender for future therapeutics. Ann Transl Med. 2019 Dec;7(Suppl 8):S299. doi: 10.21037/atm.2019.11.15. PMID: 32016018; PMCID:PMC6976402.

  5. Liu M, Won Lee J, Jung S, Ji S, Choi Y. (2019) Ability of S100 proteins and matrix metalloproteinase-9 to identify periodontitis in a ligature-induced periodontitis dog model. J Clin Periodontol. 2020 Feb;47(2):182-192. doi:10.1111/jcpe.13215. Epub 2019 Nov 20. PMID: 31680280.

  6. Daneshgaran G, Lo AY, Paik CB, Cooper MN, Sung C, Jiao W, Park SY, Ni P, Yu RP, Vorobyova I, Jashashvili T, Hong YK, Kim GH, Conti PS, Chai Y, Wong AK. (2019) A Pre-clinical Animal Model of Secondary Head and Neck Lymphedema. Sci Rep. 2019 Dec 4;9(1):18264. doi: 10.1038/s41598-019-54201-2. PubMed PMID: 31797883; PubMed Central PMCID: PMC6892928.

  7. Morris CF, Kiszonas AM, Murray J, Boehm J Jr., Ibba MI, Zhang M, Cai X.(2019) Re-evolution of Durum Wheat by Introducing the Hardness and Glu-D1 Loci. Front. Sustain. Food Syst., 15 November 2019.

  8. Ibba MI, Zhang M, Cai X, Morris CF.(2019) Identification of a conserved ph1b-mediated 5DS–5BS crossing over site in soft-kernel durum wheat (Triticum turgidum subsp. durum) lines. Euphytica 215, 200.

  9. Liang C, Shao Q, Zhang W, Yang M, Chang Q, Chen R, Chen JF.(2019) Smcr8 deficiency disrupts axonal transport-dependent lysosomal function and promotes axonal swellings and gain of toxicity in C9ALS/FTD mouse models. Hum Mol Genet. 2019 Dec 1;28(23):3940-3953. PubMed PMID: 31625563; PubMed Central PMCID: PMC7282195.

  10. Liu Z, Shao C, Jin B, Zhang Z, Zhao Y, Xu X, Tang R. (2019) Crosslinking ionic oligomers as conformable precursors to calcium carbonate. Nature. 2019 Oct;574(7778):394-398. doi: 10.1038/s41586-019-1645-x. Epub 2019 Oct 16. PubMed PMID: 31619792.

  11. Janeckova E, Feng J, Li J, Rodriguez G, Chai Y.(2019) Dynamic activation of Wnt, Fgf, and Hh signaling during soft palate development. PLoS One. 2019 Oct 15;14(10):e0223879. doi: 10.1371/journal.pone.0223879. eCollection 2019. PubMed PMID: 31613912; PubMed Central PMCID: PMC6793855.

  12. Sabag E, Halperin E, Liron T, Hiram-Bab S, Frenkel B, Gabet Y.(2019) Hormone-Independent Sexual Dimorphism in the Regulation of Bone Resorption by Krox20. J Bone Miner Res. 2019 Dec;34(12):2277-2286. doi: 10.1002/jbmr.3847. Epub 2019 Sep 12. PMID: 31398266.

  13. You R, Liu YP, Lin DC, Li Q, Yu T, Zou X, Lin M, Zhang XL, He GP, Yang Q, Zhang YN, Xie YL, Jiang R, Wu CY, Zhang C, Cui C, Wang JQ, Wang Y, Zhuang AH, Guo GF, Hua YJ, Sun R, Yun JP, Zuo ZX, Liu ZX, Zhu XF, Kang TB, Qian CN, Mai HQ, Sun Y, Zeng MS, Feng L, Zeng YX, Chen MY. (2019) Clonal Mutations Activate the NF-KB Pathway to Promote Recurrence of Nasopharyngeal Carcinoma. Cancer Res. 2019 Dec 1;79(23):5930-5943. doi: 10.1158/0008-5472.CAN-18-3845. Epub 2019 Sep 4. PMID:31484669.

  14. Shao C, Jin B, Mu Z, Lu H, Zhao Y, Wu Z, Yan L, Zhang Z, Zhou Y, Pan H, Liu Z, Tang R. (2019) Repair of tooth enamel by a biomimetic mineralization frontier ensuring epitaxial growth. Sci Adv. 2019 Aug 30;5(8):eaaw9569. doi:10.1126/sciadv.aaw9569. eCollection 2019 Aug. PubMed PMID: 31497647; PubMed Central PMCID: PMC6716959.

  15. Hartel NG, Chew B, Qin J, Xu J, Graham NA. (2019) Deep Protein Methylation Profiling by Combined Chemical and Immunoaffinity Approaches Reveals Novel PRMT1 Targets. Mol Cell Proteomics. 2019 Nov;18(11):2149-2164. doi: 10.1074/mcp.RA119.001625. Epub 2019 Aug 26. PMID: 31451547; PMCID: PMC6823857.

  16. Yao S, Lin X, Xu Y, Chen Y, Qiu P, Shao C, Jin B, Mu Z, Sommerdijk NAJM, Tang R. (2019) Osteoporotic Bone Recovery by a Highly Bone-Inductive Calcium Phosphate Polymer-Induced Liquid-Precursor. Adv Sci (Weinh). 2019 Aug 20;6(19):1900683. doi: 10.1002/advs.201900683. eCollection 2019 Oct 2. PubMed PMID: 31592093; PubMed Central PMCID: PMC6774089.

  17. Lin L, Lin DC. (2019) Biological Significance of Tumor Heterogeneity in Esophageal Squamous Cell Carcinoma. Cancers (Basel). 2019 Aug 12;11(8):1156. doi: 10.3390/cancers11081156. PMID: 31409002; PMCID: PMC6721624.

  18. Kegulian NC, Ramms B, Horton S, Trenchevska O, Nedelkov D, Graham MJ, Lee RG, Esko JD, Yassine HN, Gordts PLSM. (2019) ApoC-III Glycoforms Are Differentially Cleared by Hepatic TRL (Triglyceride-Rich Lipoprotein) Receptors. Arterioscler Thromb Vasc Biol. 2019 Oct;39(10):2145-2156. doi: 10.1161/ATVBAHA.119.312723. Epub 2019 Aug 8. PubMed PMID: 31390883; PubMed Central PMCID: PMC6761044.

  19. Sun QY, Ding LW, Johnson K, Zhou S, Tyner JW, Yang H, Doan NB, Said JW, Xiao JF, Loh XY, Ran XB, Venkatachalam N, Lao Z, Chen Y, Xu L, Fan LF, Chien W, Lin DC, Koeffler HP. (2019) SOX7 regulates MAPK/ERK-BIM mediated apoptosis in cancer cells. Oncogene. 2019 Aug;38(34):6196-6210. doi: 10.1038/s41388-019-0865-8. Epub 2019 Jul 22. PMID: 31332289.

  20. Roberts RR, Bobzin L, Teng CS, Pal D, Tuzon CT, Schweitzer R, Merrill AE. (2019) FGF signaling patterns cell fate at the interface between tendon and bone. Development. 2019 Aug 2;146(15). pii: dev170241. doi: 10.1242/dev.170241. PubMed PMID: 31320326; PubMed Central PMCID: PMC6703712.

  21. Wang J, Qu Y, Chen C, Sun J, Pan H, Shao C, Tang R, Gu X. (2019) Fabrication of collagen membranes with different intrafibrillar mineralization degree as a potential use for GBR. Mater Sci Eng C Mater Biol Appl. 2019 Nov;104:109959. doi:10.1016/j.msec.2019.109959. Epub 2019 Jul 8. PubMed PMID: 31500040.

  22. Qian FC, Li XC, Guo JC, Zhao JM, Li YY, Tang ZD, Zhou LW, Zhang J, Bai XF, Jiang Y, Pan Q, Wang QY, Li EM, Li CQ, Xu LY, Lin DC. (2019) SEanalysis: a web tool for super-enhancer associated regulatory analysis. Nucleic Acids Res. 2019 Jul 2;47(W1):W248-W255. doi: 10.1093/nar/gkz302. PMID: 31028388; PMCID: PMC6602466.

  23. Zhang W, Yang SL, Yang M, Herrlinger S, Shao Q, Collar JL, Fierro E, Shi Y, Liu A, Lu H, Herring BE, Guo ML, Buch S, Zhao Z, Xu J, Lu Z, Chen JF. (2019) Modeling microcephaly with cerebral organoids reveals a WDR62-CEP170-KIF2A pathway promoting cilium disassembly in neural progenitors. Nat Commun. 2019 Jun 13;10(1):2612. doi: 10.1038/s41467-019-10497-2. PubMed PMID: 31197141; PubMed Central PMCID: PMC6565620.

  24. Zhang W, Zhu X, Zhang M, Shi G, Liu Z, Cai X. (2019) Chromosome engineering-mediated introgression and molecular mapping of novel Aegilops speltoides-derived resistance genes for tan spot and Septoria nodorum blotch diseases in wheat. Theor Appl Genet. 2019 Sep;132(9):2605-2614. doi: 10.1007/s00122-019-03374-5. Epub 2019 Jun 10. PMID: 31183521.

  25. Jing J, Feng J, Li J, Han X, He J, Ho TV, Du J, Zhou X, Urata M, Chai Y.(2019) Antagonistic interaction between Ezh2 and Arid1a coordinates root patterning and development via Cdkn2a in mouse molars. Elife. 2019 Jul 1;8. pii: e46426. doi:10.7554/eLife.46426. PubMed PMID: 31259687; PubMed Central PMCID: PMC6602580.

  26. Silva TC, Coetzee SG, Gull N, Yao L, Hazelett DJ, Noushmehr H, Lin DC, Berman BP. (2019) ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles. Bioinformatics. 2019 Jun 1;35(11):1974-1977. doi: 10.1093/bioinformatics/bty902. PMID: 30364927; PMCID:PMC6546131.

  27. Tuzon CT, Rigueur D, Merrill AE. (2019) Nuclear Fibroblast Growth Factor Receptor Signaling in Skeletal Development and Disease. Curr Osteoporos Rep. 2019 Jun;17(3):138-146. doi: 10.1007/s11914-019-00512-2. PMID: 30982184; PMCID:PMC8221190.

  28. Lin C, Yu S, Jin R, Xiao Y, Pan M, Pei F, Zhu X, Huang H, Zhang Z, Chen S, Liu H, Chen Z. (2019) Circulating miR-338 Cluster activities on osteoblast differentiation: Potential Diagnostic and Therapeutic Targets for Postmenopausal Osteoporosis. Theranostics. 2019 May 31;9(13):3780-3797. doi: 10.7150/thno.34493. eCollection 2019. PubMed PMID: 31281513; PubMed Central PMCID: PMC6587346.

  29. Shi C, Yuan Y, Guo Y, Jing J, Ho TV, Han X, Li J, Feng J, Chai Y. (2019) BMP Signaling in Regulating Mesenchymal Stem Cells in Incisor Homeostasis. J Dent Res. 2019 Jul;98(8):904-911. doi: 10.1177/0022034519850812. Epub 2019 May 28. PubMed PMID: 31136721; PubMed Central PMCID: PMC6616121.

  30. Nam J, Kim DU, Kim E, Kwak B, Ko MJ, Oh AY, Park BJ, Kim YW, Kim A, Sun H, Jung Y, Lee JH, Shin HJ, Park I, Song DK, Jeong JY, Lee YH, Kim SW. (2019) Disruption of the Myc-PDE4B regulatory circuitry impairs B-cell lymphoma survival. Leukemia. 2019 Dec;33(12):2912-2923. doi: 10.1038/s41375-019-0492-y. Epub 2019 May 28. PMID: 31138843.

  31. Herrlinger S, Shao Q, Yang M, Chang Q, Liu Y, Pan X, Yin H, Xie LW, Chen JF.(2019) Lin28-mediated temporal promotion of protein synthesis is crucial for neural progenitor cell maintenance and brain development in mice. Development. 2019 May 28;146(10). pii: dev173765. doi: 10.1242/dev.173765. PubMed PMID: 31064784; PubMed Central PMCID: PMC6550015.

  32. Tao H, Lin H, Sun Z, Pei F, Zhang J, Chen S, Liu H, Chen Z. (2019) Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF-ß Signaling Pathway and Interaction With Histone Acetylation. J Bone Miner Res. 2019 Aug;34(8):1502-1516. doi: 10.1002/jbmr.3716. Epub 2019 May 21. PubMed PMID: 31112333.

  33. Ding LW, Sun QY, Edwards JJ, Fernández LT, Ran XB, Zhou SQ, Scolyer RA, Wilmott JS, Thompson JF, Doan N, Said JW, Venkatachalam N, Xiao JF, Loh XY, Pein M, Xu L, Mullins DW, Yang H, Lin DC, Koeffler HP. (2019) LNK suppresses interferon signaling in melanoma. Nat Commun. 2019 May 20;10(1):2230. doi:10.1038/s41467-019-09711-y. PMID: 31110180; PMCID: PMC6527565.

  34. Yang F, Li Y, Duan H, Wang H, Pei F, Chen Z, Zhang L. (2019) Activation of mitophagy in inflamed odontoblasts. Oral Dis. 2019 Sep;25(6):1581-1588. doi:10.1111/odi.13110. Epub 2019 May 15. PubMed PMID: 31009146.

  35. Lei J, Yap AU, Liu MQ, Fu KY. (2019) Condylar repair and regeneration in adolescents/young adults with early-stage degenerative temporomandibular joint disease: A randomised controlled study. J Oral Rehabil. 2019 Aug;46(8):704-714. doi: 10.1111/joor.12805. Epub 2019 May 7. PubMed PMID: 31009097.

  36. Li J, Rodriguez G, Han X, Janecˇková E, Kahng S, Song B, Chai Y. (2019) Regulatory Mechanisms of Soft Palate Development and Malformations. J Dent Res. 2019 Aug;98(9):959-967. doi: 10.1177/0022034519851786. Epub 2019 May 31. PubMed PMID: 31150594; PubMed Central PMCID: PMC6651766.

  37. Zhao H, Dai X, Han X, Liu A, Bao F, Bai R, Ji Z, Jian M, Ding Z, Abi ME, Chen T, Luo L, Ma M, Tao L. (2019) Borrelia burgdorferi basic membrane protein A initiates proinflammatory chemokine storm in THP 1-derived macrophages via the receptors TLR1 and TLR2. Biomed Pharmacother. 2019 Jul;115:108874. doi:10.1016/j.biopha.2019.108874. Epub 2019 Apr 16. PMID: 31003080.

  38. Liang X, Deng M, Zhang C, Ping F, Wang H, Wang Y, Fan Z, Ren X, Tao X, Wu T, Xu J, Cheng B, Xia J. (2019) Combined class I histone deacetylase and mTORC1/C2 inhibition suppresses the initiation and recurrence of oral squamous cell carcinomas by repressing SOX2. Cancer Lett. 2019 Jul 10;454:108-119. doi: 10.1016/j.canlet.2019.04.010. Epub 2019 Apr 11. PMID: 30981761.

  39. D Amico EJ, Sebest C, Nickle AC, Resendes KK. (2019) 5‐Fluorouracil and Gemcitabine Synergistically Facilitate the Nuclear Accumulation of Tumor Suppressors p53 and p27, Resulting in Decreased Cell Viability. FASEB, Volume 33, Issue S1.

  40. Bapat RA, Moradian-Oldak J. (2019) Immunohistochemical Co-Localization of Amelogenin and Ameloblastin in Developing Enamel Matrix. Methods Mol Biol. 2019;1922:219-228. doi: 10.1007/978-1-4939-9012-2_22. PMID: 30838580; PMCID:PMC8011542.

  41. Su J, Bapat RA, Moradian-Oldak J. (2019) The Expression and Purification of Recombinant Mouse Ameloblastin in E. coli. Methods Mol Biol. 2019;1922:229-236.doi: 10.1007/978-1-4939-9012-2_23. PubMed PMID: 30838581; PMCID: PMC8011534.

  42. Yao S, Xu Y, Shao C, Nudelman F, Sommerdijk NAJM, Tang R. (2019) A Biomimetic Model for Mineralization of Type-I Collagen Fibrils. Methods Mol Biol. 2019;1944:39-54. doi: 10.1007/978-1-4939-9095-5_4. PubMed PMID: 30840234.

  43. Mukherjee K, Ruan Q, Moradian-Oldak J. (2019) Peptide-Mediated Biomimetic Regrowth of Human Enamel In Situ. Methods Mol Biol. 2019;1922:129-138. doi: 10.1007/978-1-4939-9012-2_13. PubMed PMID: 30838571; PMCID: PMC8006743.

  44. Shao Q, Liang C, Chang Q, Zhang W, Yang M, Chen JF. (2019) C9orf72 deficiency promotes motor deficitsof a C9ALS/FTD mouse model in a dose-dependent manner. Acta Neuropathol Commun. 2019 Mar 4;7(1):32. doi: 10.1186/s40478-019-0685-7. PubMed PMID: 30832726; PubMed Central PMCID: PMC6398253.

  45. Su J, Kegulian NC, Arun Bapat R, Moradian-Oldak J. (2019) Ameloblastin Binds to Phospholipid Bilayers via a Helix-Forming Motif within the Sequence Encoded by Exon 5. ACS Omega. 2019 Feb 28;4(2):4405-4416. doi: 10.1021/acsomega.8b03582. PubMed PMID: 30873509; PubMed Central PMCID: PMC6410667.

  46. Lin L, Huang M, Shi X, Mayakonda A, Hu K, Jiang YY, Guo X, Chen L, Pang B, Doan N, Said JW, Xie J, Gery S, Cheng X, Lin Z, Li J, Berman BP, Yin D, Lin DC, Koeffler HP. (2019) Super-enhancer-associated MEIS1 promotes transcriptional dysregulation in Ewing sarcoma in co-operation with EWS-FLI1. Nucleic Acids Res. 2019 Feb 20;47(3):1255-1267. doi: 10.1093/nar/gky1207. PMID: 30496486; PMCID:PMC6379679.

  47. Cai J, Burrow MF, Manton DJ, Tsuda Y, Sobh EG, Palamara JEA. (2019) Effects of silver diamine fluoride/potassium iodide on artificial root caries lesions with adjunctive application of proanthocyanidin. Acta Biomater. 2019 Apr 1;88:491-502. doi: 10.1016/j.actbio.2019.02.020. Epub 2019 Feb 15. PMID: 30776507.

  48. Khan A, Liu Q, Chen X, Stucky A, Sedghizadeh PP, Adelpour D, Zhang X, Wang K, Zhong JF. (2019) Detection of human papillomavirus in cases of head and neck squamous cell carcinoma by RNA-seq and VirTect. Mol Oncol. 2019 Apr;13(4):829-839. doi:10.1002/1878-0261.12435. Epub 2019 Feb 23. PMID: 30597724; PMCID: PMC6441885.

  49. Yuan Y, Chai Y. (2019) Regulatory mechanisms of jaw bone and tooth development. Curr Top Dev Biol. 2019;133:91-118. doi: 10.1016/bs.ctdb.2018.12.013. Epub 2019 Feb 11. PMID: 30902260; PMCID: PMC6986348.

  50. Baboota RK, Shinde AB, Lemaire K, Fransen M, Vinckier S, Van Veldhoven PP, Schuit F, Baes M. (2019) Functional peroxisomes are required for β-cell integrity in mice. Mol Metab. 2019 Apr;22:71-83. doi: 10.1016/j.molmet.2019.02.001. Epub 2019 Feb 8. PubMed PMID: 30795913; PubMed Central PMCID: PMC6437690.

  51. Kim DU, Nam J, Cha MD, Kim SW. (2019) Inhibition of phosphodiesterase 4D decreases the malignant properties of DLD-1 colorectal cancer cells by repressing the AKT/mTOR/Myc signaling pathway. Oncol Lett. 2019 Mar;17(3):3589-3598. doi:10.3892/ol.2019.9996. Epub 2019 Jan 31. PMID: 30867802; PMCID: PMC6396110.

  52. Kousa YA, Zhu H, Fakhouri WD, Lei Y, Kinoshita A, Roushangar RR, Patel NK, Agopian AJ, Yang W, Leslie EJ, Busch TD, Mansour TA, Li X, Smith AL, Li EB, Sharma DB, Williams TJ, Chai Y, Amendt BA, Liao EC, Mitchell LE, Bassuk AG, Gregory S, Ashley-Koch A, Shaw GM, Finnell RH, Schutte BC. (2019) The TFAP2A-IRF6-GRHL3 genetic pathway is conserved in neurulation. Hum Mol Genet. 2019 May 15;28(10):1726-1737. doi: 10.1093/hmg/ddz010. PubMed PMID: 30689861; PubMed Central PMCID: PMC6494790.

  53. Wisdom C, Chen C, Yuca E, Zhou Y, Tamerler C, Snead ML. (2019) Repeatedly Applied Peptide Film Kills Bacteria on Dental Implants. JOM (1989). 2019 Apr;71(4):1271-1280. doi: 10.1007/s11837-019-03334-w. Epub 2019 Jan 18. PubMed PMID: 31178649; PubMed Central PMCID: PMC6550465.

  54. Salva JE, Roberts RR, Stucky TS, Merrill AE. (2019) Nuclear FGFR2 regulates musculoskeletal integration within the developing limb. Dev Dyn. 2019 Mar;248(3):233-246. doi: 10.1002/dvdy.9. Epub 2019 Jan 28. PubMed PMID: 30620790; PubMed Central PMCID: PMC6474847.

  55. Zheng B, Mao C, Gu T, Pan H, Shao C, Sun J, Chen C, Tang R, Gu X. (2019) Phosphorylated chitosan to promote biomimetic mineralization of type I collagen as a strategy for dentin repair and bone tissue engineering. New J. Chem, 2019, 43, 2002-2010. DOI: 10.1039/C8NJ04889D

  56. Nirvani M, Khuu C, Tulek A, Utheim TP, Sand LP, Snead ML, Sehic A.(2019) Transcriptomic analysis of MicroRNA expression in enamel-producing cells. Gene. 2019 Mar 10;688:193-203. doi: 10.1016/j.gene.2018.11.089. Epub 2018 Dec 5. PubMed PMID: 30529249.

  57. Lao ZT, Ding LW, An O, Hattori N, Sun QY, Tan KT, Mayakonda A, Chuan WG, Madan V, Lin DC, Yang H, Koeffler HP. (2019) Mutational and transcriptomic profiling of acute leukemia of ambiguous lineage reveals obscure but clinically important lineage bias. Haematologica. 2019 May;104(5):e200-e203. doi:10.3324/haematol.2018.202911. Epub 2018 Dec 4. PMID: 30514800; PMCID:PMC6518916.

  58. Peng L, Jiang B, Yuan X, Qiu Y, Peng J, Huang Y, Zhang C, Zhang Y, Lin Z, Li J, Yao W, Deng W, Zhang Y, Meng M, Pan X, Li C, Yin D, Bi X, Li G, Lin DC.(2019) Super-Enhancer-Associated Long Noncoding RNA HCCL5 Is Activated by ZEB1 and Promotes the Malignancy of Hepatocellular Carcinoma. Cancer Res. 2019 Feb 1;79(3):572-584. doi: 10.1158/0008-5472.CAN-18-0367. Epub 2018 Nov 27. PMID:30482773.

  59. Rigueur D, Roberts RR, Bobzin L, Merrill AE. (2019) A requirement for Fgfr2 in middle ear development. Genesis. 2019 Jan;57(1):e23252. doi: 10.1002/dvg.23252. Epub 2018 Oct 4. PubMed PMID: 30253032; PubMed Central PMCID: PMC6349551.

  60. Ding LW, Tan KT, Sun QY, Lao ZT, Yang H, Jiang N, Chien W, Xiao JF, Loh XY, Huang ML, Lill M, Lin DC, Yeoh AEJ, Koeffler HP. (2019) Clonality and clonal evolution analysis of paediatric ALL based on B-cell receptor/T-cell receptor rearrangement. Br J Haematol. 2019 Mar;184(5):829-833. doi: 10.1111/bjh.15179. Epub 2018 Mar 13. PMID: 29532914.

  1. Li B, Yu L, Liu D, Yang X, Zheng Y, Gui Y, Wang H. (2018) MIB1 mutations reduce Notch signaling activation and contribute to congenital heart disease. Clin Sci (Lond). 2018 Dec 5;132(23):2483-2491. doi: 10.1042/CS20180732. Erratum in: Clin Sci (Lond). 2020 Jan 17;134(1):1. PMID: 30322850; PMCID: PMC6365626.

  2. Corces MR, Granja JM, Shams S, Louie BH, Seoane JA, Zhou W, Silva TC, Groeneveld C, Wong CK, Cho SW, Satpathy AT, Mumbach MR, Hoadley KA, Robertson AG, Sheffield NC, Felau I, Castro MAA, Berman BP, Staudt LM, Zenklusen JC, Laird PW, Curtis C; Cancer Genome Atlas Analysis Network, Greenleaf WJ, Chang HY. (2018) The chromatin accessibility landscape of primary human cancers. Science. 2018 Oct 26;362(6413):eaav1898. doi: 10.1126/science.aav1898. PMID: 30361341; PMCID:PMC6408149.

  3. Bhargava R, Yu H, Chilukuri AT, Kim J, Yuk SM, Lee SR, Fuller TW, Buckley JC, Bhargava V, Rajasekaran MR. (2018) A Novel Endoluminal Ultrasound Imaging Technique to Determine Urethral Luminal Cross-Sectional Area. J Endourol. 2018 Dec;32(12):1087-1092. doi: 10.1089/end.2018.0554. Epub 2018 Oct 23. PMID:30191741.

  4. Tao J, Fijneman A, Wan J, Prajapati S, Mukherjee K, Fernandez-Martinez A, Moradian-Oldak J, De Yoreo JJ.(2018) Control of Calcium Phosphate Nucleation and Transformation through Interactions of Enamelin and Amelogenin Exhibits the “Goldilocks Effect”. Cryst. Growth Des. 2018, 18, 7391−7400.

  5. Mayakonda A, Lin DC, Assenov Y, Plass C, Koeffler HP. (2018) Maftools: efficient and comprehensive analysis of somatic variants in cancer. Genome Res. 2018 Nov;28(11):1747-1756. doi: 10.1101/gr.239244.118. Epub 2018 Oct 19. PMID:30341162; PMCID: PMC6211645.

  6. Wang Z, Ouyang Y, Wu Z, Zhang L, Shao C, Fan J, Zhang L, Shi Y, Zhou Z, Pan H, Tang R, Fu B. (2018) A novel fluorescent adhesive-assisted biomimetic mineralization. Nanoscale. 2018 Oct 18;10(40):18980-18987. doi: 10.1039/c8nr02078g. PubMed PMID: 30191236.

  7. Luo J, Chimge NO, Zhou B, Flodby P, Castaldi A, Firth AL, Liu Y, Wang H, Yang C, Marconett CN, Crandall ED, Offringa IA, Frenkel B, Borok Z. (2018) CLDN18.1 attenuates malignancy and related signaling pathways of lung adenocarcinoma in vivo and in vitro. Int J Cancer. 2018 Dec 15;143(12):3169-3180. doi:10.1002/ijc.31734. Epub 2018 Oct 16. PubMed PMID: 30325015; PubMed Central PMCID:PMC6263834.

  8. Bravo-Arredondo JM, Kegulian NC, Schmidt T, Pandey NK, Situ AJ, Ulmer TS, Langen R. (2018) The folding equilibrium of huntingtin exon 1 monomer depends on its polyglutamine tract. J Biol Chem. 2018 Dec 21;293(51):19613-19623. doi: 10.1074/jbc.RA118.004808. Epub 2018 Oct 12. PubMed PMID: 30315108; PubMed Central PMCID: PMC6314148.

  9. Tan KT, Ding LW, Sun QY, Lao ZT, Chien W, Ren X, Xiao JF, Loh XY, Xu L, Lill M, Mayakonda A, Lin DC, Yang H, Koeffler HP. (2018) Profiling the B/T cell receptor repertoire of lymphocyte derived cell lines. BMC Cancer. 2018 Oct 1;18(1):940. doi: 10.1186/s12885-018-4840-5. PMID: 30285677; PMCID: PMC6167786.

  10. Guo Y, Yuan Y, Wu L, Ho TV, Jing J, Sugii H, Li J, Han X, Feng J, Guo C, Chai Y. (2018) BMP-IHH-mediated interplay between mesenchymal stem cells and osteoclasts supports calvarial bone homeostasis and repair. Bone Res. 2018 Oct 17;6:30. doi: 10.1038/s41413-018-0031-x. eCollection 2018. PubMed PMID: 30345151; PubMed Central PMCID: PMC6193039.

  11. Jin W, Liu Z, Wu Y, Jin B, Shao C, Xu X, Tang R, Pan H.(2018) Synergic Effect of Sr2+ and Mg2+ on the Stabilization of Amorphous Calcium Phosphate. Cryst. Growth Des. 2018, 18, 10, 6054-6060.

  12. Li SC, Stucky A, Chen X, Kabeer MH, Loudon WG, Plant AS, Torno L, Nangia CS, Cai J, Zhang G, Zhong JF. (2018) Single-cell transcriptomes reveal the mechanism for a breast cancer prognostic gene panel. Oncotarget. 2018 Sep 7;9(70):33290-33301. doi: 10.18632/oncotarget.26044. PMID: 30279960; PMCID: PMC6161791.

  13. Jiang Y, Jiang YY, Xie JJ, Mayakonda A, Hazawa M, Chen L, Xiao JF, Li CQ, Huang ML, Ding LW, Sun QY, Xu L, Kanojia D, Jeitany M, Deng JW, Liao LD, Soukiasian HJ, Berman BP, Hao JJ, Xu LY, Li EM, Wang MR, Bi XG, Lin DC, Koeffler HP. (2018) Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression. Nat Commun. 2018 Sep 6;9(1):3619. doi:10.1038/s41467-018-06081-9. PMID: 30190462; PMCID: PMC6127298.

  14. Katsuno Y, Qin J, Oses-Prieto J, Wang H, Jackson-Weaver O, Zhang T, Lamouille S, Wu J, Burlingame A, Xu J, Derynck R. (2018) Arginine methylation of SMAD7 by PRMT1 in TGF-β-induced epithelial-mesenchymal transition and epithelial stem-cell generation. J Biol Chem. 2018 Aug 24;293(34):13059-13072. doi:10.1074/jbc.RA118.002027. Epub 2018 Jun 15. PubMed PMID: 29907569; PubMed Central PMCID: PMC6109915.

  15. Liu X, Cheng Y, Abraham JM, Wang Z, Wang Z, Ke X, Yan R, Shin EJ, Ngamruengphong S, Khashab MA, Zhang G, McNamara G, Ewald AJ, Lin D, Liu Z, Meltzer SJ. (2018) Modeling Wnt signaling by CRISPR-Cas9 genome editing recapitulates neoplasia in human Barrett epithelial organoids. Cancer Lett. 2018 Nov 1;436:109-118. doi: 10.1016/j.canlet.2018.08.017. Epub 2018 Aug 23. PMID:30144514; PMCID: PMC6152930.

  16. Zhang W, Zhu X, Zhang M, Chao S, Xu S, Cai X. (2018) Meiotic homoeologous recombination-based mapping of wheat chromosome 2B and its homoeologues in Aegilops speltoides and Thinopyrum elongatum. Theor Appl Genet. 2018 Nov;131(11):2381-2395. doi: 10.1007/s00122-018-3160-0. Epub 2018 Aug 14. PMID: 30109393.

  17. Xiao JF, Sun QY, Ding LW, Chien W, Liu XY, Mayakonda A, Jiang YY, Loh XY, Ran XB, Doan NB, Castor B, Chia D, Said JW, Tan KT, Yang H, Fu XY, Lin DC, Koeffler HP. (2018) The c-MYC-BMI1 axis is essential for SETDB1-mediated breast tumourigenesis. J Pathol. 2018 Sep;246(1):89-102. doi: 10.1002/path.5126. Epub 2018 Aug 3. PMID:29926931.

  18. Kim E, Nam J, Chang W, Zulfugarov IS, Okhlopkova ZM, Olennikov D, Chirikova NK, Kim SW. (2018) Angelica gigas Nakai and Decursin Downregulate Myc Expression to Promote Cell Death in B-cell Lymphoma. Sci Rep. 2018 Jul 12;8(1):10590. doi:10.1038/s41598-018-28619-z. PMID: 30002430; PMCID: PMC6043616.

  19. Guo X, Zhang Y, Mayakonda A, Madan V, Ding LW, Lin LH, Zia S, Gery S, Tyner JW, Zhou W, Yin D, Lin DC, Koeffler HP. (2018) ARID1A and CEBPa cooperatively inhibit UCA1 transcription in breast cancer. Oncogene. 2018 Nov;37(45):5939-5951. doi:10.1038/s41388-018-0371-4. Epub 2018 Jul 6. PMID: 29980791.

  20. Li J, Yuan Y, He J, Feng J, Han X, Jing J, Ho TV, Xu J, Chai Y. (2018) Constitutive activation of hedgehog signaling adversely affects epithelial cell fate during palatal fusion. Dev Biol. 2018 Sep 1;441(1):191-203. doi:10.1016/j.ydbio.2018.07.003. Epub 2018 Jul 5. PubMed PMID: 29981310; PubMed Central PMCID: PMC6152919.

  21. Chen X, Wen Q, Stucky A, Zeng Y, Gao S, Loudon WG, Ho HW, Kabeer MH, Li SC, Zhang X, Zhong JF. (2018) Relapse pathway of glioblastoma revealed by single-cell molecular analysis. Carcinogenesis. 2018 Jul 3;39(7):931-936. doi:10.1093/carcin/bgy052. PMID: 29718126; PMCID: PMC6248540.

  22. Gou Y, Li J, Jackson-Weaver O, Wu J, Zhang T, Gupta R, Cho I, Ho TV, Chen Y, Li M, Richard S, Wang J, Chai Y, Xu J.(2018) Protein Arginine Methyltransferase PRMT1 Is Essential for Palatogenesis. J Dent Res. 2018 Dec;97(13):1510-1518. doi: 10.1177/0022034518785164. Epub 2018 Jul 9. PubMed PMID: 29986157; PubMed Central PMCID: PMC6728548.

  23. Zeng D, Zhang X, Wang X, Cao L, Zheng A, Du J, Li Y, Huang Q, Jiang X.(2018) Fabrication of large-pore mesoporous Ca-Si-based bioceramics for bone regeneration. Int J Nanomedicine. 2017 Nov 15;12:8277-8287. doi:10.2147/IJN.S144528. PMID: 29180865; PMCID: PMC5695511.

  24. Willeford A, Suetomi T, Nickle A, Hoffman HM, Miyamoto S, Brown JH.(2018) CaMKIIδ-mediated inflammatory gene expression and inflammasome activation in cardiomyocytes initiate inflammation and induce fibrosis. JCI Insight. 2018;3(12):e97054.

  25. An Z, Akily B, Sabalic M, Zong G, Chai Y, Sharpe PT. (2018) Regulation of Mesenchymal Stem to Transit-Amplifying Cell Transition in the Continuously Growing Mouse Incisor. Cell Rep. 2018 Jun 5;23(10):3102-3111. doi: 10.1016/j.celrep.2018.05.001. PubMed PMID: 29874594; PubMed Central PMCID: PMC6383149.

  26. Lin S, Cao L, Wang Q, Du J, Jiao D, Duan S, Wu J, Gan Q, Jiang X. (2018) Tailored biomimetic hydrogel based on a photopolymerised DMP1/MCF/gelatin hybrid system for calvarial bone regeneration. J Mater Chem B. 2018 Jan 21;6(3):414-427. doi: 10.1039/c7tb02130e. Epub 2017 Dec 21. PMID: 32254521.

  27. Stucky A, Chen X, Zhong JF. (2018) Gene Manipulation with Micro RNAs at Single-Human Cancer Cell. Methods Mol Biol. 2018;1733:215-223. doi:10.1007/978-1-4939-7601-0_18. PMID: 29435936; PMCID: PMC5966013.

  28. Zhao R, Liu X, Yang X, Jin B, Shao C, Kang W, Tang R. (2018) Nanomaterial-Based Organelles Protect Normal Cells against Chemotherapy-Induced Cytotoxicity. Adv Mater. 2018 Jul;30(27):e1801304. doi: 10.1002/adma.201801304. Epub 2018 May 15. PubMed PMID: 29761566.

  29. Zeng Y, Gao L, Luo X, Chen Y, Kabeer MH, Chen X, Stucky A, Loudon WG, Li SC, Zhang X, Zhong JF. (2018) Microfluidic enrichment of plasma cells improves treatment of multiple myeloma. Mol Oncol. 2018 Jun;12(7):1004-1011. doi:10.1002/1878-0261.12201. Epub 2018 May 12. Erratum in: Mol Oncol. 2021 Jan;15(1):317. PMID: 29638042; PMCID: PMC6026869.

  30. Watt KEN, Neben CL, Hall S, Merrill AE, Trainor PA. (2018) tp53-dependent and independent signaling underlies the pathogenesis and possible prevention of Acrofacial Dysostosis – Cincinnati type. Hum Mol Genet. 2018 Aug 1;27(15):2628-2643. doi: 10.1093/hmg/ddy172. PubMed PMID: 29750247; PubMed Central PMCID: PMC6927876.

  31. Amzaleg Y, Ji J, Kittivanichkul D, E Törnqvist A, Windahl S, Sabag E, Khalid AB, Sternberg H, West M, Katzenellenbogen JA, Krum SA, Chimge NO, Schones DE, Gabet Y, Ohlsson C, Frenkel B. (2018) Estrogens and selective estrogen receptor modulators differentially antagonize Runx2 in ST2 mesenchymal progenitor cells. J Steroid Biochem Mol Biol. 2018 Oct;183:10-17. doi: 10.1016/j.jsbmb.2018.05.002. Epub 2018 May 8. PubMed PMID: 29751107; PubMed Central PMCID: PMC6128776.

  32. Gou Y, Li J, Wu J, Gupta R, Cho I, Ho TV, Chai Y, Merrill A, Wang J, Xu J.(2018) Prmt1 regulates craniofacial bone formation upstream of Msx1. Mech Dev. 2018 Aug;152:13-20. doi: 10.1016/j.mod.2018.05.001. Epub 2018 May 1. PubMed PMID: 29727702.

  33. Hao Z, Ma Y, Liu W, Meng Y, Nakamura K, Shen J, Wang H. (2018) Influence of low-temperature degradation on the wear characteristics of zirconia against polymer-infiltrated ceramic-network material. J Prosthet Dent. 2018 Oct;120(4):596-602. doi: 10.1016/j.prosdent.2017.12.014. Epub 2018 Apr 30. PubMed PMID: 29724551.

  34. Herrlinger SA, Shao Q, Ma L, Brindley M, Chen JF. (2018) Establishing Mouse Models for Zika Virus-induced Neurological Disorders Using Intracerebral Injection Strategies: Embryonic, Neonatal, and Adult. J Vis Exp. 2018 Apr 26;(134). doi:10.3791/56486. PubMed PMID: 29757270; PubMed Central PMCID: PMC6035874.

  35. Ray J, Yang X, Kong F, Guo T, Deng F, Clough S, Ramonell K.(2018) A novel receptor‐like kinase involved in fungal pathogen defence in Arabidopsis thaliana. Journal of Phytopathology. 2018;166:506–515.

  36. Dong K, Guo X, Chen W, Hsu AC, Shao Q, Chen JF, Chen SY. (2018)
    Mesenchyme Homeobox 1 mediates transforming growth factor-β (TGF-β)-induced smooth muscle cell differentiation from mouse mesenchymal progenitors. J Biol Chem. 2018 Jun 1;293(22):8712-8719. doi: 10.1074/jbc.RA118.002350. Epub 2018 Apr 20. PubMed PMID: 29678882; PubMed Central PMCID: PMC5986210.

  37. Chen Y, Millstein J, Liu Y, Chen GY, Chen X, Stucky A, Qu C, Fan JB, Chang X, Soleimany A, Wang K, Zhong J, Liu J, Gilliland FD, Li Z, Zhang X, Zhong JF.(2018) Single-Cell Digital Lysates Generated by Phase-Switch Microfluidic Device Reveal Transcriptome Perturbation of Cell Cycle. ACS Nano. 2018 May 22;12(5):4687-4694. doi: 10.1021/acsnano.8b01272. Epub 2018 Apr 18. PMID: 29589910; PMCID:PMC5997256.

  38. Giannobile WV, Chai Y, Chen Y, Healy KE, Klein O, Lane N, Longaker MT, Lotz JC, Mooney DJ, Sfeir CS, Urata M, Wagner WR, Wu BM, Kohn DH. (2018) Dental, Oral, and Craniofacial Regenerative Medicine: Transforming Biotechnologies for Innovating Patient Care. J Dent Res. 2018 Apr;97(4):361-363. doi: 10.1177/0022034518761346. PubMed PMID: 29557734; PubMed Central PMCID: PMC5863875.

  39. Ma XJ, Liu XM, Bi J, Liu Y, Chen X.(2018) Construction of cell sheets of stem cells from apical papilla and characterization of their biological properties. Shanghai Kou Qiang Yi Xue. 2018 Apr;27(2):123-128. Chinese. PubMed PMID:30146636.

  40. Lee MK, Yen SL, Allareddy V. (2018) Hospitalization Outcomes of Cleft Lip Repair in Neonates Across the United States. Cleft Palate Craniofac J. 2018 Apr;55(4):528-535. doi: 10.1177/1055665617726531. Epub 2017 Dec 27. PubMed PMID: 29554443.

  41. Wu J, Jackson-Weaver O, Xu J. (2018) The TGFβ superfamily in cardiac dysfunction. Acta Biochim Biophys Sin (Shanghai). 2018 Apr 1;50(4):323-335. doi:10.1093/abbs/gmy007. Review. PubMed PMID: 29462261; PubMed Central PMCID:PMC6676786.

  42. Bi J, Liu Y, Liu XM, Jiang LM, Chen X. (2018) iRoot FM exerts an antibacterial effect on Porphyromonas endodontalis and improves the properties of stem cells from the apical papilla. Int Endod J. 2018 Oct;51(10):1139-1148. doi: 10.1111/iej.12923. Epub 2018 Mar 25. PubMed PMID: 29514388.

  43. Song Y, He J, Wang R, Ma J, Zou L.(2018) Effect of SrtA on Interspecies Adherence of Oral Bacteria. Curr Med Sci. 2018 Feb;38(1):160-166. doi:10.1007/s11596-018-1860-y. Epub 2018 Mar 15. Erratum in: Curr Med Sci. 2018 Apr;38(2):386. PubMed PMID: 30074166.

  44. Li Y, Wang H, Pei F, Chen Z, Zhang L. (2018) FoxO3a Regulates Inflammation-induced Autophagy in Odontoblasts. J Endod. 2018 May;44(5):786-791. doi:10.1016/j.joen.2017.12.023. Epub 2018 Mar 15. PubMed PMID: 29551204.

  45. Zhao G, Huang BL, Rigueur D, Wang W, Bhoot C, Charles KR, Baek J, Mohan S, Jiang J, Lyons KM. (2018) CYR61/CCN1 Regulates Sclerostin Levels and Bone Maintenance. J Bone Miner Res. 2018 Jun;33(6):1076-1089. doi: 10.1002/jbmr.3394. Epub 2018 Mar 5. PubMed PMID: 29351359; PubMed Central PMCID: PMC6002906.

  46. Mukherjee K, Ruan Q, Nutt S, Tao JH, De Yoreo JJ, Moradian-Oldak J. (2018) Peptide-Based Bioinspired Approach to Regrowing Multilayered Aprismatic Enamel. ACS Omega. 2018 Mar 31;3(3):2546-2557. doi: 10.1021/acsomega.7b02004. Epub 2018 Mar 2. PubMed PMID: 29623301; PubMed Central PMCID: PMC5879487.

  47. Shu L, Xiong W, Shao C, Huang T, Duan P, Liu K, Xu X, Ma W, Tang R.(2018) Improvement in the Photobiological Hydrogen Production of Aggregated Chlorella by Dimethyl Sulfoxide. Chembiochem. 2018 Apr 4;19(7):669-673. doi:10.1002/cbic.201700637. Epub 2018 Feb 23. PubMed PMID: 29377527.

  48. Wang YC, Chuang YH, Shao Q, Chen JF, Chen SY. (2018) Brain cytoplasmic RNA 1 suppresses smooth muscle differentiation and vascular development in mice. J Biol Chem. 2018 Apr 13;293(15):5668-5678. doi: 10.1074/jbc.RA117.001578. Epub 2018 Feb 21. PubMed PMID: 29467228; PubMed Central PMCID: PMC5900757.

  49. Xie JJ, Jiang YY, Jiang Y, Li CQ, Lim MC, An O, Mayakonda A, Ding LW, Long L, Sun C, Lin LH, Chen L, Wu JY, Wu ZY, Cao Q, Fang WK, Yang W, Soukiasian H, Meltzer SJ, Yang H, Fullwood M, Xu LY, Li EM, Lin DC, Koeffler HP. (2018) Super-Enhancer-Driven Long Non-Coding RNA LINC01503, Regulated by TP63, Is Over-Expressed and Oncogenic in Squamous Cell Carcinoma. Gastroenterology. 2018 Jun;154(8):2137-2151.e1. doi: 10.1053/j.gastro.2018.02.018. Epub 2018 Feb 15. Erratum in: Gastroenterology. 2021 Nov;161(5):1726-1727. PMID: 29454790.

  50. Zhang T, Wu J, Ungvijanpunya N, Jackson-Weaver O, Gou Y, Feng J, Ho TV, Shen Y, Liu J, Richard S, Jin J, Hajishengallis G, Chai Y, Xu J. (2018) Smad6 Methylation Represses NFκB Activation and Periodontal Inflammation. J Dent Res. 2018 Jul;97(7):810-819. doi: 10.1177/0022034518755688. Epub 2018 Feb 8. PubMed PMID: 29420098; PubMed Central PMCID: PMC6728583.

  51. Ran J, Zeng H, Cai J, Jiang P, Yan P, Zheng L, Bai Y, Shen X, Shi B, Tong H.(2018) Rational design of a stable, effective, and sustained dexamethasone delivery platform on a titanium implant: An innovative application of metal organic frameworks in bone implants. Chemical Engineering Journal. Volume 333, 1 February 2018, Pages 20-33.

  52. Zhao Z, Tao L, Liu A, Ma M, Li H, Zhao H, Yang J, Wang S, Jin Y, Shao X, Bao F. (2018) NF‑κB is a key modulator in the signaling pathway of Borrelia burgdorferi BmpA‑induced inflammatory chemokines in murine microglia BV2 cells. Mol Med Rep. 2018 Apr;17(4):4953-4958. doi: 10.3892/mmr.2018.8526. Epub 2018 Jan 31. PMID:29393443; PMCID: PMC5865954.

  53. Bobarnac Dogaru GL, Juneja SC, Shokrani A, Hui RY, Chai Y, Pepper JP. (2018) The role of Hedgehog-responsive fibroblasts in facial nerve regeneration. Exp Neurol. 2018 May;303:72-79. doi: 10.1016/j.expneurol.2018.01.008. Epub 2018 Jan 11. PubMed PMID: 29337143.

  54. Li X, Fok KL, Guo J, Wang Y, Liu Z, Chen Z, Wang C, Ruan YC, Yu SS, Zhao H, Wu J, Jiang X, Chan HC. (2018) Retinoic acid promotes stem cell differentiation and embryonic development by transcriptionally activating CFTR. Biochim Biophys Acta Mol Cell Res. 2018 Apr;1865(4):605-615. doi: 10.1016/j.bbamcr.2018.01.005. Epub 2018 Jan 9. PubMed PMID: 29326073.

  55. Shao C, Zhao R, Jiang S, Yao S, Wu Z, Jin B, Yang Y, Pan H, Tang R.(2018) Citrate Improves Collagen Mineralization via Interface Wetting: A Physicochemical Understanding of Biomineralization Control. Adv Mater. 2018 Feb;30(8). doi:10.1002/adma.201704876. Epub 2018 Jan 8. PubMed PMID: 29315839.

  56. Herzog CR, Berzins DW, DenBesten P, Gregory RL, Hargreaves KM, Messer RLW, Mina M, Mooney MP, Paine ML, Phillips C, Presland RB, Quivey RG, Scannapieco FA, Sheridan JF, Svoboda KKH, Trackman PC, Walker MP, Walker SG, Wang CY, Hu JCC.(2018) Oral Sciences PhD Program Enrollment, Graduates, and Placement: 1994 to 2016. J Dent Res. 2018 May;97(5):483-491. doi: 10.1177/0022034517749506. Epub 2018 Jan 12. PubMed PMID: 29328868; PubMed Central PMCID: PMC6728576.

  57. Hazawa M, Lin DC, Kobayashi A, Jiang YY, Xu L, Dewi FRP, Mohamed MS, Hartono, Nakada M, Meguro-Horike M, Horike SI, Koeffler HP, Wong RW. (2018) ROCK-dependent phosphorylation of NUP62 regulates p63 nuclear transport and squamous cell carcinoma proliferation. EMBO Rep. 2018 Jan;19(1):73-88. doi: 10.15252/embr.201744523. Epub 2017 Dec 7. PMID: 29217659; PMCID: PMC5757218.

  58. Liu C, Xu GR, Du JZ, Sun J, Wan X, Liu XJ, Su JT, Liang J, Zheng GL, Xie LP, Zhang RQ.(2018) Mineralization of Nacre-like Structures Mediated by Extrapallial Fluid on Pearl Nucleus. Crystal Growth & Design, 2018, 18 (1), pp 32–36.

  59. Zhang W, Zhang M, Zhu X, Cao Y, Sun Q, Ma G, Chao S, Yan C, Xu SS, Cai X.(2018) Molecular cytogenetic and genomic analyses reveal new insights into the origin of the wheat B genome. Theor Appl Genet. 2018 Feb;131(2):365-375. doi: 10.1007/s00122-017-3007-0. Epub 2017 Nov 1. PMID: 29094182.

  60. Janečková E, Bíliková P, Matalová E. (2018) Osteogenic Potential of Caspases Related to Endochondral Ossification. J Histochem Cytochem. 2018 Jan;66(1):47-58. doi:10.1369/0022155417739283. Epub 2017 Nov 1. PubMed PMID: 29091523; PubMed Central PMCID: PMC5761947.

  61. Cai J, Palamara JEA, Burrow MF. (2018) Effects of Collagen Crosslinkers on Dentine: A Literature Review. Calcif Tissue Int. 2018 Mar;102(3):265-279. doi: 10.1007/s00223-017-0343-7. Epub 2017 Oct 20. PMID: 29058055.

  62. Cai J, Palamara J, Manton DJ, Burrow MF. (2018) Status and progress of treatment methods for root caries in the last decade: a literature review. Aust Dent J. 2018 Mar;63(1):34-54. doi: 10.1111/adj.12550. Epub 2017 Oct 17. PMID: 28833210.

  63. Shi Z, Yang X, Li BB, Chen S, Yang L, Cheng L, Zhang T, Wang H, Zheng Y.(2018) Novel Mutation of LRP6 Identified in Chinese Han Population Links Canonical WNT Signaling to Neural Tube Defects. Birth Defects Res. 2018 Jan 15;110(1):63-71. doi: 10.1002/bdr2.1122. Epub 2017 Sep 29. PMID: 28960852.

  64. Zhao Z, Jia Q, Wu MS, Xie X, Wang Y, Song G, Zou CY, Tang Q, Lu J, Huang G, Wang J, Lin DC, Koeffler HP, Yin JQ, Shen J. (2018) Degalactotigonin, a Natural Compound from Solanum nigrum L., Inhibits Growth and Metastasis of Osteosarcoma through GSK3ß Inactivation-Mediated Repression of the Hedgehog/Gli1 Pathway. Clin Cancer Res. 2018 Jan 1;24(1):130-144. doi:10.1158/1078-0432.CCR-17-0692. Epub 2017 Sep 26. PMID: 28951519.

  65. He J, Tu Q, Ge Y, Qin Y, Cui B, Hu X, Wang Y, Deng Y, Wang K, Van Nostrand JD, Li J, Zhou J, Li Y, Zhou X. (2018) Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts. Microbial ecology. 2018; 75(2):543-554. PubMed [journal] PMID: 28932895.

  66. Takao S, Chien W, Madan V, Lin DC, Ding LW, Sun QY, Mayakonda A, Sudo M, Xu L, Chen Y, Jiang YY, Gery S, Lill M, Park E, Senapedis W, Baloglu E, Müschen M, Koeffler HP. (2018) Targeting the vulnerability to NAD+ depletion in B-cell acute lymphoblastic leukemia. Leukemia. 2018 Mar;32(3):616-625. doi: 10.1038/leu.2017.281. Epub 2017 Sep 14. PMID: 28904384.

  67. Lin DC, Dinh HQ, Xie JJ, Mayakonda A, Silva TC, Jiang YY, Ding LW, He JZ, Xu XE, Hao JJ, Wang MR, Li C, Xu LY, Li EM, Berman BP, Phillip Koeffler H.(2018) Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas. Gut. 2018 Oct;67(10):1769-1779. doi: 10.1136/gutjnl-2017-314607. Epub 2017 Aug 31. PMID:28860350; PMCID: PMC5980794.

  68. Prajapati S, Ruan Q, Mukherjee K, Nutt S, Moradian-Oldak J. (2018) The Presence of MMP-20 Reinforces Biomimetic Enamel Regrowth. J Dent Res. 2018 Jan;97(1):84-90. doi: 10.1177/0022034517728504. Epub 2017 Aug 28. PubMed PMID: 28846464; PubMed Central PMCID: PMC5755807.

  69. Lin DC, Wang MR, Koeffler HP. (2018) Genomic and Epigenomic Aberrations in Esophageal Squamous Cell Carcinoma and Implications for Patients. Gastroenterology. 2018 Jan;154(2):374-389. doi: 10.1053/j.gastro.2017.06.066. Epub 2017 Jul 27. PMID: 28757263; PMCID: PMC5951382.