Publications

For publications prior to 2018, please see individual faculty & staff profiles.

 

2025
2024
2023
2022
2021
2020
2019
2018

  1. Raulino Lima J, Ungvijanpunya N, Chen Q, Hai Pham HQ, Rosen T, Park G, Vatankhah M, Yen S, Chai Y, Merrill AE, Liu Z, Chen JF, Yang Y, Peng W, Xu J. (2025) PRMT1-SFPQ regulates intron retention to control matrix gene expression during craniofacial development. bioRxiv [Preprint]. 2025 Nov 10:2024.07.09.598733. doi: 10.1101/2024.07.09.598733. PMID: 41292806; PMCID: PMC12642664.

  2. Shen KA, Lee JJ, Cheng SY, Jackert EP, Tang L, Kwon D, Kokot N, Sinha U, Chai Y, Eoh H, Han AY. (2025) Enhanced glycolysis and nicotinamide metabolism in HPV-positive head and neck cancer. Sci Rep. 2025 Nov 28;15(1):42714. doi: 10.1038/s41598-025-26690-x. PMID: 41315496; PMCID: PMC12663544.

  3. Zarinfar M, Aghazadeh M, Bapat RA, Ji Y, Paine ML. (2025) Enamel Maturation as a Systems Physiology: Ion Transport and Pi Flux. Cells. 2025 Nov 20;14(22):1821. doi: 10.3390/cells14221821. PMID: 41294875; PMCID: PMC12651383.

  4. Neubert JK, Allen K, Alliston T, Almarza AJ, Athanasiou KA, Donertas-Ayaz B, de Paula BB, Bavarian R, Bhutani N, Cairns BE, Caudle RM, Chai Y, Chen JF, Chen Y, Clark GT, Cruz-Almeida Y, DaSilva AF, Durham PL, Estela AV, Embree M, Fillingim R, Guastaldi F, Handa S, Kapila SD, Keith D, Kirkwood KL, Kramer P, Martucci KT, Murphy NP, Nackley AG, Ohrbach R, Sagl B, Smith SB, Tao F, Winkelstein B, Yao H, Young S, Gold MS. (2025) Preclinical perspectives on disorders of the temporomandibular joint: Tracing the past, navigating the present, and shaping the future. J Pain. 2025 Nov;36:105560. doi: 10.1016/j.jpain.2025.105560. Epub 2025 Sep 13. PMID: 40953762; PMCID: PMC12677152.

  5. Wenger TA, Wong S, Cheng SY, Tang L, Kwon D, Kokot N, Chai Y, Sinha U, Han AY. (2025) Incidence and Outcomes of Head and Neck Cancer in Patients With Schizophrenia. OTO Open. 2025 Sep 19;9(3):e70164. doi: 10.1002/oto2.70164. PMID: 40978803; PMCID: PMC12447352.

  6. Sinha UK, Park YM, Lin DC. (2025) A high-power spatial, single-cell view of pericytes in esophageal cancer metastasis. Nat Genet. 2025 Oct;57(10):2350-2351. doi: 10.1038/s41588-025-02318-8. PMID: 41073784.

  7. Waters KM, Merchant A, Lin DC. (2025) Unmasking cancer's hidden nerve route with patient-derived organoids. Cell Stem Cell. 2025 Oct 2;32(10):1481-1482. doi: 10.1016/j.stem.2025.08.008. PMID: 41043399.

  8. Chang Q, Ma L, Lin Z, Shu Y, Ko PF, Blumberg M, Chen JF. (2025) Identification of lymphatic vessels in skull periosteum but not bone marrow reveals skull channel heterogeneity. J Exp Med. 2025 Dec 1;222(12):e20241971. doi: 10.1084/jem.20241971. Epub 2025 Sep 19. PMID: 40970910; PMCID: PMC12447874.

  9. Meng L, Feng J, Guo T, Zhang M, Cha S, Chen P, Ziaei H, Harouni A, Ho TV, Chai Y. (2025) Piezo2+ mechanosensory neurons orchestrate postnatal development through mechano-chemo-transduction of PDGFA signaling. Proc Natl Acad Sci U S A. 2025 Jul 15;122(28):e2504103122. doi: 10.1073/pnas.2504103122. Epub 2025 Jul 8. PMID: 40627386.

  10. Um JH, Zheng Y, Mao Q, Nam C, Zhao H, Koh YW, Shin SJ, Park YM, Lin DC. (2025) Genomic and Single-Cell Analyses Characterize Patient-Derived Tumor Organoids to Enable Personalized Therapy for Head and Neck Squamous Cell Carcinoma. Cancer Res. 2025 Jul 15;85(14):2726-2742. doi: 10.1158/0008-5472.CAN-24-2850. PMID: 40261963; PMCID: PMC12263324.

  11. Trainor PA, Cox TC, Clouthier DE, Fantauzzo KA, Harris MP, Jeong J, Stottmann RW, Merrill AE. (2025) The Society for Craniofacial Genetics and Developmental Biology 47th Annual Meeting. Am J Med Genet A. 2025 Jul;197(7):e64059. doi: 10.1002/ajmg.a.64059. Epub 2025 Mar 17. PMID: 40095424.

  12. Feng J, Janečková E, Guo T, Ziaei H, Zhang M, Geng JJ, Cha S, Araujo-Villalba A, Liu M, Ho TV, Chai Y. (2025) High-resolution spatial transcriptomics and cell lineage analysis reveal spatiotemporal cell fate determination during craniofacial development. Nat Commun. 2025 May 12;16(1):4396. doi: 10.1038/s41467-025-59206-2. PMID: 40355462.

  13. Bauza Nowotny E, Jassar S, Phark JH, Moradian-Oldak J. (2025) Treating White Spot Lesions and Non-Carious Cervical Lesions with Amelogenin Peptide-Based Hydrogel. Biomimetics (Basel). 2025 Feb 18;10(2):120. doi: 10.3390/biomimetics10020120. PMID: 39997143; PMCID: PMC11853660.

  14. Nam C, Huang G, Zheng Y, Zhao H, Pan Y, Hu B, Wenger T, Van HT, Xu LY, Li EM, Koeffler HP, Ge K, Dou Y, Sinha UK, Park YM, Lin DC. (2025) The MLL3/GRHL2 complex regulates malignant transformation and anti-tumor immunity in squamous cancer. J Exp Med. 2025 Apr 7;222(4):e20240758. doi: 10.1084/jem.20240758. Epub 2025 Feb 18. PMID: 39964485; PMCID: PMC11834937.

  15. Jariyasakulroj S, Shu Y, Lin Z, Chen J, Chang Q, Ko PF, Chen JF. (2025) Mapping cell diversity and dynamics in inflammatory temporomandibular joint osteoarthritis with pain at single-cell resolution. JCI Insight. 2025 Feb 10;10(3):e184379. doi: 10.1172/jci.insight.184379. PMID: 39927459.

  16. Wang L, Liu Z, Zhao S, Xu K, Aceves V, Qiu C, Feng HC, Bian F, He J, Song CJ, Troutwine B, Liu L, Ma S, Niu Y, Wang S, Yuan S, Li X, Zhao L, Liu X, Qiu G, Wu Z; Deciphering disorders Involving Scoliosis and COmorbidities (DISCO) study group; Zhang TJ, Gray RS, Wu N. (2025) Variants in the SOX9 transactivation middle domain induce axial skeleton dysplasia and scoliosis. Proc Natl Acad Sci U S A. 2025 Jan 28;122(4):e2313978121. doi: 10.1073/pnas.2313978121. Epub 2025 Jan 24. PMID: 39854231.

  17. Bobzin L, Nickle A, Ko S, Ince M, Huang A, Bhojwani A, Roberts R, Merrill AE. (2025) FGFR2 directs inhibition of WNT signaling to regulate anterior fontanelle closure during skull development. Development. 2025 Jan 15;152(2):dev204264. doi: 10.1242/dev.204264. Epub 2025 Jan 20. PMID: 39775862; PMCID: PMC11829768.

  18. Ramos R, Pham KT, Prince RC, Leiser-Miller LB, Prasad MS, Wang X, Nordberg RC, Bielajew BJ, Hu JC, Yamaga K, Oh JW, Peng T, Datta R, Astrowskaja A, Almet AA, Burns JT, Liu Y, Guerrero-Juarez CF, Tran BQ, Chu YL, Nguyen AM, Hsi TC, Lim NT, Schoeniger S, Liu R, Pai YL, Vadivel CK, Ingleby S, McKechnie AE, van Breukelen F, Hoehn KL, Rasweiler JJ 4th, Kohara M, Loughry WJ, Weldy SH, Cosper R, Yang CC, Lin SJ, Cooper KL, Santana SE, Bradley JE, Kiebish MA, Digman M, James DE, Merrill AE, Nie Q, Schilling TF, Astrowski AA, Potma EO, García-Castro MI, Athanasiou KA, Behringer RR, Plikus MV. (2025) Superstable lipid vacuoles endow cartilage with its shape and biomechanics. Science. 2025 Jan 10;387(6730):eads9960. doi: 10.1126/science.ads9960. Epub 2025 Jan 10. PMID: 39787221; PMCID: PMC12279017.

  19. Buchanan C, Chen S, Yuan Y, Guo T, Feng J, Zhang M, Carey G, Howard I, Sanchez J, Ho TV, Chai Y. (2025) Loss of Runx2 in Gli1+ osteogenic progenitors prevents bone loss following ovariectomy. JBMR Plus. 2024 Nov 9;9(1):ziae141. doi: 10.1093/jbmrpl/ziae141. PMID: 39996169; PMCID: PMC11848843.

  1. Kegulian NC, Moradian-Oldak J. (2024) Deletion within ameloblastin multitargeting domain reduces its interaction with artificial cell membrane. J Struct Biol. 2024 Dec;216(4):108143. doi: 10.1016/j.jsb.2024.108143. Epub 2024 Oct 22. PMID: 39447937.

  2. Bian F, Hansen V, Feng HC, He J, Chen Y, Feng K, Ebrahimi B, Gray RS, Chai Y, Wu CL, Liu Z. (2024) The G protein-coupled receptor ADGRG6 maintains mouse growth plate homeostasis through IHH signaling. J Bone Miner Res. 2024 Oct 29;39(11):1644-1658. doi: 10.1093/jbmr/zjae144. PMID: 39236220; PMCID: PMC11523133.

  3. Jariyasakulroj S, Chang Q, Ko PF, Shu Y, Lin Z, Chen J, Chen JF. (2024) Temporomandibular Joint Pain Measurement by Bite Force and Von Frey Filament Assays in Mice. J Vis Exp. 2024 Sep 13;(211). doi: 10.3791/67203. PMID: 39345152.

  4. Vistoso Monreal A, Zhao H, Sedghizadeh PP, Lin DC. (2024) Patient-derived tumor organoids to model drug response in gastric cancer. Cell Rep Med. 2024 Jul 16;5(7):101650. doi: 10.1016/j.xcrm.2024.101650. PMID: 39019014; PMCID: PMC11293348.

  5. Zhang W, Zhang M, Ma L, Jariyasakulroj S, Chang Q, Lin Z, Lu Z, Chen JF. (2024) Impaired phase separation and nucleolar functions in hiPSC models of SNORD118-related ribosomopathies. iScience. 2024 Jul 1;27(8):110430. doi: 10.1016/j.isci.2024.110430. PMID: 39108718; PMCID: PMC11300908.

  6. Nam C, Li LY, Yang Q, Ziman B, Zhao H, Hu B, Collet C, Jing P, Lei Q, Xu LY, Li EM, Koeffler HP, Sinha UK, Lin DC. (2024) A druggable cascade links methionine metabolism to epigenomic reprogramming in squamous cell carcinoma. Proc Natl Acad Sci U S A. 2024 Jun 25;121(26):e2320835121. doi: 10.1073/pnas.2320835121. Epub 2024 Jun 20. PMID: 38900797; PMCID: PMC11214090.

  7. Pei F, Guo T, Zhang M, Ma L, Jing J, Feng J, Ho TV, Wen Q, Chai Y. (2024) FGF signaling modulates mechanotransduction/WNT signaling in progenitors during tooth root development. Bone Res. 2024 Jun 24;12(1):37. doi: 10.1038/s41413-024-00345-5. PMID: 38910207; PMCID: PMC11194271.

  8. Zhang M, Guo T, Pei F, Feng J, Jing J, Xu J, Yamada T, Ho TV, Du J, Sehgal P, Chai Y. (2024) ARID1B maintains mesenchymal stem cell quiescence via inhibition of BCL11B-mediated non-canonical Activin signaling. Nat Commun. 2024 May 30;15(1):4614. doi: 10.1038/s41467-024-48285-2. PMID: 38816354; PMCID: PMC11139927.

  9. Kegulian NC, Visakan G, Bapat RA, Moradian-Oldak J. (2024) Ameloblastin and its multifunctionality in amelogenesis: A review. Matrix Biol. 2024 Aug;131:62-76. doi: 10.1016/j.matbio.2024.05.007. Epub 2024 May 28. PMID: 38815936; PMCID: PMC11218920.

  10. Guo T, Pei F, Zhang M, Yamada T, Feng J, Jing J, Ho TV, Chai Y. (2024) Vascular architecture regulates mesenchymal stromal cell heterogeneity via P53-PDGF signaling in the mouse incisor. Cell Stem Cell. 2024 Jun 6;31(6):904-920.e6. doi: 10.1016/j.stem.2024.04.011. Epub 2024 May 3. PMID: 38703771; PMCID: PMC11162319.

  11. Ziman B, Yang Q, Zheng Y, Sheth M, Nam C, Zhao H, Zhang L, Hu B, Bhowmick NA, Sinha UK, Lin DC. (2024) Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell Death Dis. 2024 Feb 19;15(2):152. doi: 10.1038/s41419-024-06488-x. PMID: 38373993; PMCID: PMC10876663.

  12. Stanton E, Feng J, Kondra K, Sanchez J, Jimenez C, Brown KS, Skiles ML, Urata MM, Chai Y, Hammoudeh JA. (2024) A Calvarial Defect Model to Investigate the Osteogenic Potential of Umbilical Cord Stem Cells in Bone Regeneration. Plast Reconstr Surg. 2024 Mar 1;153(3):637-646. doi: 10.1097/PRS.0000000000010754. Epub 2023 May 24. PMID: 37224290.

  13. Pei F, Ma L, Guo T, Zhang M, Jing J, Wen Q, Feng J, Lei J, He J, Janečková E, Ho TV, Chen JF, Chai Y. (2024) Sensory nerve regulates progenitor cells via FGF-SHH axis in tooth root morphogenesis. Development. 2024 Jan 15;151(2):dev202043. doi: 10.1242/dev.202043. Epub 2024 Jan 11. PMID: 38108472; PMCID: PMC10820866.

  14. Zhang W, Zhang M, Ma L, Jariyasakulroj S, Chang Q, Lin Z, Lu Z, Chen JF. (2024) Recapitulating and reversing human brain ribosomopathy defects via the maladaptive integrated stress response. Sci Adv. 2024 Feb 2;10(5):eadk1034. doi: 10.1126/sciadv.adk1034. Epub 2024 Feb 2. PMID: 38306425; PMCID: PMC10836730.

  1. Zhang M, Feng J, Li Y, Qin PZ, Chai Y. (2023) Generation of tamoxifen-inducible Tfap2b-CreERT2 mice using CRISPR-Cas9. Genesis. 2024 Feb;62(1):e23582. doi: 10.1002/dvg.23582. Epub 2023 Dec 8. PMID: 38069547; PMCID: PMC11021159.

  2. Ma L, Wang F, Li Y, Wang J, Chang Q, Du Y, Sadan J, Zhao Z, Fan G, Yao B, Chen JF. (2023) Brain methylome remodeling selectively regulates neuronal activity genes linking to emotional behaviors in mice exposed to maternal immune activation. Nat Commun. 2023 Nov 29;14(1):7829. doi: 10.1038/s41467-023-43497-4. PMID: 38030616; PMCID: PMC10687003.

  3. Jariyasakulroj S, Zhang W, Bai J, Zhang M, Lu Z, Chen JF. (2023) Ribosome biogenesis controls cranial suture MSC fate via the complement pathway in mouse and human iPSC models. Stem Cell Reports. 2023 Dec 12;18(12):2370-2385. doi: 10.1016/j.stemcr.2023.10.015. Epub 2023 Nov 16. PMID: 37977145; PMCID: PMC10724072.

  4. Park YM, Lin DC. (2023) Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics. Nat Commun. 2023 Nov 2;14(1):7017. doi: 10.1038/s41467-023-42960-6. PMID: 37919364; PMCID: PMC10622517.

  5. Ma L, Chang Q, Pei F, Liu M, Zhang W, Hong YK, Chai Y, Chen JF. (2023) Skull progenitor cell-driven meningeal lymphatic restoration improves neurocognitive functions in craniosynostosis. Cell Stem Cell. 2023 Nov 2;30(11):1472-1485.e7. doi: 10.1016/j.stem.2023.09.012. Epub 2023 Oct 19. PMID: 37863055; PMCID: PMC10842404.

  6. Zheng Y, Ziman B, Ho AS, Sinha UK, Xu LY, Li EM, Koeffler HP, Berman BP, Lin DC. (2023) Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation. Genome Biol. 2023 Aug 24;24(1):193. doi: 10.1186/s13059-023-03035-3. PMID: 37620896; PMCID: PMC10463844.

  7. Lin DC. (2023) Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nat Commun. 2023 Feb 17;14(1):893. doi: 10.1038/s41467-023-36557-2. PMID: 36807265; PMCID: PMC9938131.

  8. Jing J, Zhang M, Guo T, Pei F, Yang Y, and Chai Y. (2022) Rodent incisor as a model to study mesenchymal stem cells in tissue homeostasis and repair. Front. Dent. Med, 30 November 2022, Volume 3 – 2022. https://doi.org/10.3389/fdmed.2022.1068494.

  9. Zhou Y, Fyrner T, Chen CH, Sather NA, Hsu EL, Stupp SI, Snead ML. (2023) Optimization of peptide amphiphile-lipid raft interaction by changing peptide amphiphile lipophilicity. Acta Biomater. 2023 Jul 1;164:377-386. doi: 10.1016/j.actbio.2023.04.004. Epub 2023 Apr 10. PMID: 37040812; PMCID: PMC10225347.

  10. Ruspita I, Das P, Miyoshi K, Noma T, Snead ML, Bei M. (2023) Enam expression is regulated by Msx2. Dev Dyn. 2023 Oct;252(10):1292-1302. doi: 10.1002/dvdy.598. Epub 2023 May 16. PMID: 37191055; PMCID: PMC10592542.

  11. Sinha UK, Lin DC. (2023) A novel role of master regulator transcription factor in anti-tumor immunity and cancer immunotherapy. Theranostics. 2023 Mar 16;13(6):1823-1825. doi: 10.7150/thno.83486. PMID: 37064876; PMCID: PMC10091883.

  12. Ma L, Liang C, Wang J, Chang Q, Wang Y, Zhang W, Du Y, Sadan J, Chen JF. (2023) Reversing lysosome-ribosome circuit dysregulation mitigates C9FTD/ALS neurodegeneration and behaviors. Hum Mol Genet. 2023 Apr 6;32(8):1252-1265. doi: 10.1093/hmg/ddac271. PMID: 36322143; PMCID: PMC10077508.

  13. Janečková E, Feng J, Guo T, Han X, Ghobadi A, Araujo-Villalba A, Rahman MS, Ziaei H, Ho TV, Pareek S, Alvarez J, Chai Y. (2023) Canonical Wnt signaling regulates soft palate development by mediating ciliary homeostasis. Development. 2023 Mar 1;150(5):dev201189. doi: 10.1242/dev.201189. Epub 2023 Mar 9. PMID: 36825984; PMCID: PMC10108707.

  14. Kegulian NC, Langen R, Moradian-Oldak J. (2023) The Dynamic Interactions of a Multitargeting Domain in Ameloblastin Protein with Amelogenin and Membrane. Int J Mol Sci. 2023 Feb 9;24(4):3484. doi: 10.3390/ijms24043484. PMID: 36834897; PMCID: PMC9966149.

  15. Pei F, Ma L, Jing J, Feng J, Yuan Y, Guo T, Han X, Ho TV, Lei J, He J, Zhang M, Chen JF, Chai Y. (2023) Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis. Nat Commun. 2023 Jan 20;14(1):344. doi: 10.1038/s41467-023-35977-4. PMID: 36670126; PMCID: PMC9859800.

  1. Jing J, Zhang M, Guo T, Pei F, Yang Y, Chai Y. (2022) Rodent incisor as a model to study mesenchymal stem cells in tissue homeostasis and repair. Front. Dent. Med. 2022 Nov 29;3:1068494. doi: 10.3389/fdmed.2022.1068494.

  2. Visakan G, Bapat RA, Su J, Moradian-Oldak J. (2022) Modeling ameloblast-matrix interactions using 3D cell culture. Front Physiol. 2022 Dec 1;13:1069519. doi: 10.3389/fphys.2022.1069519. PMID: 36531170; PMCID: PMC9751369.

  3. Feng J, Han X, Yuan Y, Cho CK, Janečková E, Guo T, Pareek S, Rahman MS, Zheng B, Bi J, Jing J, Zhang M, Xu J, Ho TV, Chai Y. (2022) TGF-β signaling and Creb5 cooperatively regulate Fgf18 to control pharyngeal muscle development. Elife. 2022 Dec 21;11:e80405. doi: 10.7554/eLife.80405. PMID: 36542062; PMCID: PMC9771365.

  4. Zhao H, Cheng Y, Kalra A, Ma K, Zheng Y, Ziman B, Tressler C, Glunde K, Shin EJ, Ngamruengphong S, Khashab M, Singh V, Anders RA, Jit S, Wyhs N, Chen W, Li X, Lin DC, Meltzer SJ. (2022) Generation and multiomic profiling of a TP53/CDKN2A double-knockout gastroesophageal junction organoid model. Sci Transl Med. 2022 Nov 30;14(673):eabq6146. doi: 10.1126/scitranslmed.abq6146. Epub 2022 Nov 30. PMID: 36449602; PMCID: PMC10026384.

  5. Lin DC. (2022) Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nat Commun. 2023 Feb 17;14(1):893. doi: 10.1038/s41467-023-36557-2. PMID: 36807265; PMCID: PMC9938131.

  6. Stanton E, Feng J, Kondra K, Sanchez J, Jimenez C, Brown KS, Skiles ML, Urata MM, Chai Y, Hammoudeh JA. (2022) A Calvarial Defect Model to Investigate the Osteogenic Potential of Umbilical Cord Stem Cells in Bone Regeneration. Plast Reconstr Surg. 2024 Mar 1;153(3):637-646. doi: 10.1097/PRS.0000000000010754. Epub 2023 May 24. PMID: 37224290.

  7. Sinha UK, Kast WM, Lin DC. (2022) Single-cell genomics identifies immune response to neoadjuvant chemoradiotherapy. EBioMedicine. 2022 Dec;86:104389. doi: 10.1016/j.ebiom.2022.104389. Epub 2022 Dec 1. PMID: 36463779; PMCID: PMC9718959.

  8. Stanton E, Sheridan S, Urata M, Chai Y. (2022) From Bedside to Bench and Back: Advancing Our Understanding of the Pathophysiology of Cleft Palate and Implications for the Future. Cleft Palate Craniofac J. 2024 May;61(5):759-773. doi: 10.1177/10556656221142098. Epub 2022 Dec 1. PMID: 36457208.

  9. Ma L, Liang C, Wang J, Chang Q, Wang Y, Zhang W, Du Y, Sadan J, Chen JF. (2022) Reversing lysosome-ribosome circuit dysregulation mitigates C9FTD/ALS neurodegeneration and behaviors. Hum Mol Genet. 2023 Apr 6;32(8):1252-1265. doi: 10.1093/hmg/ddac271. PMID: 36322143; PMCID: PMC10077508.5

  10. Zhao H, Collet C, Peng D, Sinha UK, Lin DC. (2022) Investigation of early neoplastic transformation and premalignant biology using genetically engineered organoid models. Comput Struct Biotechnol J. 2022 Sep 21;20:5309-5315. doi: 10.1016/j.csbj.2022.09.026. PMID: 36212534; PMCID: PMC9513696.

  11. Nam C, Ziman B, Sheth M, Zhao H, Lin DC. (2022) Genomic and Epigenomic Characterization of Tumor Organoid Models. Cancers (Basel). 2022 Aug 24;14(17):4090. doi: 10.3390/cancers14174090. PMID: 36077628; PMCID: PMC9454968.

  12. Jing J, Feng J, Yuan Y, Guo T, Lei J, Pei F, Ho TV, Chai Y. (2022) Spatiotemporal single-cell regulatory atlas reveals neural crest lineage diversification and cellular function during tooth morphogenesis. Nat Commun. 2022 Aug 16;13(1):4803. doi: 10.1038/s41467-022-32490-y. PMID: 35974052; PMCID: PMC9381504.

  13. Gu R, Zhang S, Saha SK, Ji Y, Reynolds K, McMahon M, Sun B, Islam M, Trainor PA, Chen Y, Xu Y, Chai Y, Burkart-Waco D, Zhou CJ. (2022) Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts. Development. 2022 Jul 15;149(14):dev200533. doi: 10.1242/dev.200533. Epub 2022 Jul 22. PMID: 35781558; PMCID: PMC9382898.

  14. Schuler RE, Bugacov A, Hacia JG, Ho TV, Iwata J, Pearlman L, Samuels BD, Williams C, Zhao Z, Kesselman C, Chai Y. (2022) FaceBase: A Community-Driven Hub for Data-Intensive Research. J Dent Res. 2022 Oct;101(11):1289-1298. doi: 10.1177/00220345221107905. Epub 2022 Jul 31. PMID: 35912790; PMCID: PMC9516628.

  15. Liu NQ, Chen S, Geng D, Lei J, Zhang J, Li L, Lin Y, Ouyang Y, Shkhyan R, Van Handel B, Bian F, Mkaratigwa T, Chai Y, Evseenko D. (2022) Local Drug-Induced Modulation of gp130 Receptor Signaling Delays Disease Progression in a Pig Model of Temporo-Mandibular Joint Osteoarthritis. Front. Dent. Med. 2022 Jun;3:937819. doi: 10.3389/fdmed.2022.937819.

  16. Devine J, Vidal-García M, Liu W, Neves A, Lo Vercio LD, Green RM, Richbourg HA, Marchini M, Unger CM, Nickle AC, Radford B, Young NM, Gonzalez PN, Schuler RE, Bugacov A, Rolian C, Percival CJ, Williams T, Niswander L, Calof AL, Lander AD, Visel A, Jirik FR, Cheverud JM, Klein OD, Birnbaum RY, Merrill AE, Ackermann RR, Graf D, Hemberger M, Dean W, Forkert ND, Murray SA, Westerberg H, Marcucio RS, Hallgrímsson B. (2022) MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Sci Data. 2022 May 25;9(1):230. doi: 10.1038/s41597-022-01338-x. PMID: 35614082; PMCID: PMC9133120.

  17. Brugmann SA, Merrill AE, Saint-Jeannet JP, Stottmann RW, Clouthier DE. (2022) The Society for Craniofacial Genetics and Developmental Biology 44th Annual Meeting. Am J Med Genet A. 2022 Jul;188(7):2258-2266. doi: 10.1002/ajmg.a.62731. Epub 2022 Mar 29. PMID: 35352468.

  18. Woolfolk SK, Cloyd AK, Ye Q, Boone K, Spencer P, Snead ML, Tamerler C. (2022) Peptide-Enabled Nanocomposites Offer Biomimetic Reconstruction of Silver Diamine Fluoride-Treated Dental Tissues. Polymers (Basel). 2022 Mar 28;14(7):1368. doi: 10.3390/polym14071368. PMID: 35406242; PMCID: PMC9002525.

  19. Stanton E, Urata M, Chen JF, Chai Y. (2022) The clinical manifestations, molecular mechanisms and treatment of craniosynostosis. Dis Model Mech. 2022 Apr 1;15(4):dmm049390. doi: 10.1242/dmm.049390. Epub 2022 Apr 22. PMID: 35451466; PMCID: PMC9044212.

  20. Guo T, Han X, He J, Feng J, Jing J, Janečková E, Lei J, Ho TV, Xu J, Chai Y. (2022) KDM6B interacts with TFDP1 to activate P53 signaling in regulating mouse palatogenesis. Elife. 2022 Feb 25;11:e74595. doi: 10.7554/eLife.74595. PMID: 35212626; PMCID: PMC9007587.

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