Publications

For publications prior to 2018, please see individual faculty & staff profiles.

 

2024
2023
2022
2021
2020
2019
2018

  1. Kegulian N, Moradian-Oldak J. Deletion within ameloblastin multitargeting domain reduces its interaction with artificial cell membrane. Journal of Structural Biology, Volume 216, Issue 4, 2024,108143, ISSN 1047-8477. https://doi.org/10.1016/j.jsb.2024.108143.

  2. Buchanan C, Chen S, Yuan Y, Guo T, Feng J, Zhang M, Carey G, Howard I, Sanchez J, Ho TV, Chai Y. Loss of Runx2 in Gli1+ osteogenic progenitors prevents bone loss following ovariectomy. JBMR Plus, Volume 9, Issue 1, January 2025, ziae141, https://doi.org/10.1093/jbmrpl/ziae141.

  3. Bian F, Hansen V, Feng HC, He J, Chen Y, Feng K, Ebrahimi B, Gray RS, Chai Y, Wu CL, Liu Z. The G protein-coupled receptor ADGRG6 maintains mouse growth plate homeostasis through IHH signaling. J Bone Miner Res. 2024 Oct 29;39(11):1644-1658. doi: 10.1093/jbmr/zjae144. PMID: 39236220; PMCID: PMC11523133.

  4. Vistoso Monreal A, Zhao H, Sedghizadeh PP, Lin DC. Patient-derived tumor organoids to model drug response in gastric cancer. Cell Reports Medicine. July 16;5(7):101650. https://doi.org/10.1016/j.xcrm.2024.101650.

  5. Zhang W, Zhang M, Ma L, Jariyasakulroj S, Chang Q, Lin Z, Lu Z, Chen JF. Impaired phase separation and nucleolar functions in hiPSC models of SNORD118-related ribosomopathies. iScience, Volume 27, Issue 8, 2024, 110430, ISSN 2589-0042, https://doi.org/10.1016/j.isci.2024.110430.

  6. Nam C, Li LY, Yang Q, Ziman B, Zhao H, Hu B, Collet C, Jing P, Lei Q, Xu LY, Li EM, Koeffler HP, Sinha UK, Lin DC. A druggable cascade links methionine metabolism to epigenomic reprogramming in squamous cell carcinoma. Proc Natl Acad Sci U S A. 2024 Jun 25;121(26):e2320835121. doi: 10.1073/pnas.2320835121. Epub 2024 Jun 20. PMID: 38900797.

  7. Pei F, Guo T, Zhang M, Ma L, Jing J, Feng J, Ho T-V, Wen Q, Chai Y. FGF signaling modulates mechanotransduction/WNT signaling in progenitors during tooth root development. Bone Res 12, 37 (2024). https://doi.org/10.1038/s41413-024-00345-5.

  8. Zhang M, Guo T, Pei F, Feng J, Jing J, Xu J, Yamada T, Ho T-V, Du J, Sehgal P, Chai Y. ARID1B maintains mesenchymal stem cell quiescence via inhibition of BCL11B-mediated non-canonical Activin signaling. Nat Commun 15, 4614 (2024). https://doi.org/10.1038/s41467-024-48285-2.

  9. Kegulian N, Visakan G, Bapat RA, Moradian-Oldak J. Ameloblastin and its multifunctionality in amelogenesis: A review. Matrix Biology, Volume 131, 2024. https://doi.org/10.1016/j.matbio.2024.05.007.

  10. Guo, T., Pei, F., Zhang, M., Yamada, T., Feng, J., Jing, J., Ho, T-V, and Chai, Y. Vascular architecture regulates mesenchymal stromal cell heterogeneity via p53-PDGF signaling in the mouse incisor. Cell Stem Cell. 2024 May 03. https://doi.org/10.1016/j.stem.2024.04.011.

  11. Ziman B, Yang Q, Zheng Y, Sheth M, Nam C, Zhao H, Zhang L, Hu B, Bhowmick NA, Sinha UK, Lin DC*. Epigenomic analyses identify FOXM1 as a key regulator of anti-tumor immune response in esophageal adenocarcinoma. Cell Death Dis. 2024 Feb 19;15(2):152. PMID: 38373993.

  12. Stanton E, Feng J, Kondra K, Sanchez J, Jimenez C, Brown KS, Skiles ML, Urata MM, Chai Y, Hammoudeh JA. A Calvarial Defect Model to Investigate the Osteogenic Potential of Umbilical Cord Stem Cells in Bone Regeneration. Plast Reconstr Surg. 2024 Mar 1;153(3):637-646. doi: 10.1097/PRS.0000000000010754. Epub 2023 May 24. PMID: 37224290.

  13. Pei F, Ma L, Guo T, Zhang M, Jing J, Wen Q, Feng J, Lei J, He J, Janečková E, Ho TV, Chen JF, Chai Y. Sensory nerve regulates progenitor cells via FGF-SHH axis in tooth root morphogenesis. Development. 2024 Jan 15;151(2):dev202043. doi: 10.1242/dev.202043. Epub 2024 Jan 11. PMID: 38108472.

  14. Zhang W, Zhang M, Ma L, Jariyasakulroj S, Chang Q, Lin Z, Lu Z, Chen JF. Recapitulating and reversing human brain ribosomopathy defects via the maladaptive integrated stress response.  Sci Adv. 2024 Feb 2;10(5):eadk1034. doi: 10.1126/sciadv.adk1034. Epub 2024 Feb 2. PMID: 38306425; PMCID: PMC10836730.

  1. Zhang M, Feng J, Li Y, Qin PZ, Chai Y. Generation of tamoxifen-inducible Tfap2b-CreERT2 mice using CRISPR-Cas9. Genesis. 2024 Feb;62(1):e23582. doi: 10.1002/dvg.23582. Epub 2023 Dec 8. PMID: 38069547; PMCID: PMC11021159.

  2. Ma L, Wang F, Li Y, Wang J, Chang Q, Du Y, Sadan J, Zhao Z, Fan G, Yao B, Chen JF. (2023) Brain methylome remodeling selectively regulates neuronal activity genes linking to emotional behaviors in mice exposed to maternal immune activation. Nat Commun. 2023 Nov 29;14(1):7829. doi: 10.1038/s41467-023-43497-4. PMID: 38030616; PMCID: PMC10687003.

  3. Jariyasakulroj S, Zhang W, Bai J, Zhang M, Lu Z, Chen JF. (2023) Ribosome biogenesis controls cranial suture MSC fate via the complement pathway in mouse and human iPSC models. Stem Cell Reports. 2023 Dec 12;18(12):2370-2385. doi: 10.1016/j.stemcr.2023.10.015. Epub 2023 Nov 16. PMID: 37977145; PMCID: PMC10724072.

  4. Park, Y.M., Lin, DC. Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics. Nat Commun 14, 7017 (2023). https://doi.org/10.1038/s41467-023-42960-6.

  5. Ma L, Chang Q, Pei F, Liu M, Zhang W, Hong YK, Chai Y, Chen JF. Skull progenitor cell-driven meningeal lymphatic restoration improves neurocognitive functions in craniosynostosis. Cell Stem Cell. 2023 Nov 2;30(11):1472-1485.e7. doi: 10.1016/j.stem.2023.09.012. Epub 2023 Oct 19. PMID: 37863055; PMCID: PMC10842404.

  6. Zheng, Y., Ziman, B., Ho, A. S., Sinha, U. K., Xu, L.-Y., Li, E.-M., Koeffler, H. P., Berman, B. P., & Lin, D.-C. (2023) Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation. Genome Biology, 2023 Aug 24;24(1):193. doi: 10.1186/s13059-023-03035-3. PMID: 37620896.

  7. Lin DC. Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nat Commun, Feb 17; (2023) 14:893. PMID: 36807265.

  8. Jing J, Zhang M, Guo T, Pei F, Yang Y, and Chai Y. (2022) Rodent incisor as a model to study mesenchymal stem cells in tissue homeostasis and repair. Front. Dent. Med, 30 November 2022, Volume 3 – 2022. https://doi.org/10.3389/fdmed.2022.1068494.

  9. Zhou Y, Fyrner T, Chen, CH, Sather NA, Hsu EL, Stupp SI, Snead ML.Optimization of peptide amphiphile-lipid raft interaction by changing peptide amphiphile lipophilicity. Acta Biomaterialia, in press.

  10. Sinha UK, Lin DC. A novel role of master regulator transcription factor in anti-tumor immunity and cancer immunotherapy. Theranostics 2023; 13(6):1823-1825. doi:10.7150/thno.83486.

  11. Liu, M., Shao, J., Zhao, Y., Ma, B., & Ge, S. (2023). Porphyromonas gingivalis Evades Immune Clearance by Regulating Lysosome Efflux. Journal of Dental Research, 00220345221146097.

  12. Janečková E, Feng J, Guo T, Han X, Ghobadi A, Araujo-Villalba A, Rahman MS, Ziaei H, Ho TV, Pareek S, Alvarez J, Chai Y. Canonical Wnt signaling regulates soft palate development by mediating ciliary homeostasis. Development. 2023 Mar 1;150(5):dev201189. doi: 10.1242/dev.201189. Epub 2023 Mar 9. PMID: 36825984; PMCID: PMC10108707.

  13. Kegulian NC, Langen R, Moradian-Oldak J. The Dynamic Interactions of a Multitargeting Domain in Ameloblastin Protein with Amelogenin and Membrane. International Journal of Molecular Sciences. 2023; 24(4):3484. https://doi.org/10.3390/ijms24043484.

  14. Pei F, Ma L, Jing J, Feng J, Yuan Y, Guo T, Han X, Ho TV, Lei J, He J, Zhang M, Chen JF, Chai Y. Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis. Nat Commun. 2023 Jan 20;14(1):344. doi: 10.1038/s41467-023-35977-4. PMID: 36670126; PMCID: PMC9859800.

  1. Ko, Y.  K., Hong, S., Kim, H. M., Liu, M., Moon, E., Kim, P., & Choi, Y. (2022). Characterization of junctional structures in the gingival epithelium as barriers against bacterial invasion. Journal of periodontal research, 58(4), 799-810.

  2. Liu, M., Won Lee, J., Jung, S., Ji, S., & Choi, Y. (2020). Ability of S100 proteins and matrix metalloproteinase-9 to identify periodontitis in a ligature-induced periodontitis dog model. Journal of clinical periodontology, 47(2), 182-192.

  3. Liu, M., & Choi, Y. (2022). A muring periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium. Journal of periodontal & implant science, 52(2), 141-154.

  4. Zhao, Y., Shi, Y., Yang, H., Liu, M., Shen, L., Zhang, S., Liu, Y., Zhu, J., Lan, J., Li, J., & Ge, S. (2022). Stem cell microencapsulation maintains stemness in inflammatory microenvironment. International journal of oral science, 14 (1), 48.

  5. Visakan G, Bapat RA, Su J, Moradian-Oldak J. (2022) Modeling ameloblast-matrix interactions using 3D cell culture. Front Physiol. 2022;12:1069519. Published 2022 Dec 1. doi:10.3389/fphys.2022.1069519.

  6. Feng J, Han X, Yuan Y, Cho CK, Janečková E, Guo T, Pareek S, Rahman MS, Zheng B, Bi J, Jing J, Zhang M, Xu J, Ho TV, Chai Y. TGF-β signaling and Creb5 cooperatively regulate Fgf18 to control pharyngeal muscle development. Elife. 2022 Dec 21;11:e80405. doi: 10.7554/eLife.80405. PMID: 36542062; PMCID: PMC9771365. 

  7. Zhao H, Cheng Y, Kalra A, Ma K, Zheng Y, Ziman B, Tressler C, Glunde K, Shin EJ, Ngamruengphong S, Khashab M, Singh V, Anders RA, Jit S, Wyhs N, Chen W, Li X, Lin DC, Meltzer SJ. Generation and multiomic profiling of a TP53/CDKN2A double-knockout gastroesophageal junction organoid model. Sci Transl Med. 2022 Nov 30;14(673):eabq6146. doi: 10.1126/scitranslmed.abq6146. Epub 2022 Nov 30. PMID: 36449602.

  8. Lin, D.-C (2022). Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer. Nature Communications, in press.

  9. Stanton, E., Feng, J., Kondra, K., Sanchez, J., Jimenez, C., Brown, K.S., Skiles, M., Urata, M., Chai, Y., and Hammoudeh, J.A. (2022) A murine calvarial defect model for the investigation of the osteogenic potential of newborn umbilical cord mesenchymal stem cells in bone regeneration. Plastic and Reconstructive Surgery, in press. 

  10. Sinha, U. K., Kast, W. M., & Lin, D. (2022). Single-cell genomics identifies immune response to neoadjuvant chemoradiotherapy. eBioMedicine, 86, 104389. doi:10.1016/j.ebiom.2022.104389

  11. Stanton E, Sheridan S, Urata M, Chai Y. From Bedside to Bench and Back: Advancing Our Understanding of the Pathophysiology of Cleft Palate and Implications for the Future. Cleft Palate Craniofac J. 2022 Dec 1:10556656221142098. doi: 10.1177/10556656221142098. Epub ahead of print. PMID: 36457208. 

  12. Ma L, Liang C, Wang J, Chang Q, Wang Y, Zhang W, Du Y, Sadan J, Chen JF. (2022) Reversing lysosome-ribosome circuit dysregulation mitigates C9FTD/ALS neurodegeneration and behaviors. Human Molecular Genetics, accepted.

  13. Zhao H, Collet C, Peng D, Sinha UK, Lin DC. (2022) Investigation of early neoplastic transformation and premalignant biology using genetically engineered organoid models. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2022.09.026

  14. Nam C, Ziman B, Sheth M, Zhao H, Lin DC. Genomic and Epigenomic Characterization of Tumor Organoid Models. Cancers (Basel). 2022 Aug 24;14(17):4090. doi: 10.3390/cancers14174090. PMID: 36077628; PMCID: PMC9454968.

  15. Jing J, Feng J, Yuan Y, Guo T, Lei J, Pei F, Ho TV, Chai Y. Spatiotemporal single-cell regulatory atlas reveals neural crest lineage diversification and cellular function during tooth morphogenesis. Nat Commun. 2022 Aug 16;13(1):4803. doi: 10.1038/s41467-022-32490-y. PMID: 35974052; PMCID: PMC9381504. 

  16. Gu R, Zhang S, Saha SK, Ji Y, Reynolds K, McMahon M, Sun B, Islam M, Trainor PA, Chen Y, Xu Y, Chai Y, Burkart-Waco D, Zhou CJ. Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts. Development. 2022 Jul 15;149(14):dev200533. doi: 10.1242/dev.200533. Epub 2022 Jul 22. PMID: 35781558; PMCID: PMC9382898. 

  17. Schuler RE, Bugacov A, Hacia JG, Ho TV, Iwata J, Pearlman L, Samuels BD, Williams C, Zhao Z, Kesselman C, Chai Y. FaceBase: A Community-Driven Hub for Data-Intensive Research. J Dent Res. 2022 Oct;101(11):1289-1298. doi: 10.1177/00220345221107905. Epub 2022 Jul 31. PMID: 35912790; PMCID: PMC9516628.

  18. Liu, N., Chen, S., Geng, D., Lei, J., Zhang, J., Li, L., Lin, Y., Ouyang, Y., Shkhyan, R., Van Handel, B., Bian, F., Mkaratigwa, T., Chai, Y. and Evseenko, D. (2022) Local Drug-Induced Modulation of gp130 Receptor Signaling Delays Disease Progression in a Pig Model of Temporo-Mandibular Joint Osteoarthritis. Front. Dent. Med. 3:937819. doi: 10.3389/fdmed.2022.937819.

  19. Devine J, Vidal-García M, Liu W, Neves A, Lo Vercio LD, Green RM, Richbourg HA, Marchini M, Unger CM, Nickle AC, Radford B, Young NM, Gonzalez PN, Schuler RE, Bugacov A, Rolian C, Percival CJ, Williams T, Niswander L, Calof AL, Lander AD, Visel A, Jirik FR, Cheverud JM, Klein OD, Birnbaum RY, Merrill AE, Ackermann RR, Graf D, Hemberger M, Dean W, Forkert ND, Murray SA, Westerberg H, Marcucio RS, Hallgrímsson B. (2022) MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Sci Data. 2022 May 25;9(1):230. doi: 10.1038/s41597-022-01338-x. PMID: 35614082; PMCID: PMC9133120.

  20. Brugmann, S. A., Merrill, A. E., Saint-Jeannet, J.-P, Stottmann, R. W., & Clouthier, D. E. (2022) The Society for Craniofacial Genetics and Developmental Biology 44th Annual Meeting. American Journal of Medical Genetics. 188(7):2258-2266. doi:10.1002/ajmg.a.62731.

  21. Bauza Nowotny E, Lyons PJ, and Gonzalez-Socoloske D. (2022). Identification of the Eastern Massasauga Rattlesnake (Sistrurus catenatus) through genetic analysis of shed skin. Conservation Genet Resour. doi.org/10.1007/s12686-022-01274-3

  22. Woolfolk SK, Cloyd AK, Ye Q, Boone K, Spencer P, Snead ML, Tamerler C. (2022) Peptide-Enabled Nanocomposites Offer Biomimetic Reconstruction of Silver Diamine Fluoride-Treated Dental Tissues. Polymers. (Basel). 2022 Mar 28;14(7):1368. doi:10.3390/polym14071368. PMID: 35406242; PMCID: PMC9002525.

  23. Stanton E, Urata M, Chen JF, Chai Y. (2022) The clinical manifestations, molecular mechanisms, and treatment of craniosynostosis. Dis Model Mech. 2022 Apr 1;15(4):dmm049390. doi: 10.1242/dmm.049390. Epub 2022 Apr 22. PMID: 35451466; PMCID: PMC9044212.

  24. Guo T, Han X, He J, Feng J, Jing J, Janeckova E, Lei J, Ho T-V, Xu J, Chai Y. (2022) KDM6B interacts with TFDP1 to activate P53 signaling in regulating mouse palatogenesis. eLife. 2022 Feb 25;11:e74595. doi: 10.7554/eLife.74595. PMID: 35212626; PMCID: PMC9007587.

  25. Shao C, Bapat RA, Su J, Moradian-Oldak J. (2022) Regulation of Hydroxyapatite Nucleation In Vitro through Ameloblastin-Amelogenin Interactions. ACS Biomater Sci Eng. 2022 Jan 24. doi: 10.1021/acsbiomaterials.1c01113. Epub ahead of print. PMID: 35068157.

  26. Lei J, Chen S, Jing J, Guo T, Feng J, Ho TV, Chai Y. (2022) Inhibiting Hh signaling in Gli1+ osteogenic progenitors alleviates TMJOA. J Dent Res. 2022 Jan 20;220345211059079. doi: 10.1177/00220345211059079. PMID:35045740.

  27. Zhao H, Wu W, Li X, Chen W. (2022) Long noncoding RNA UCA1 promotes glutamine-driven anaplerosis of bladder cancer by interacting with hnRNP I/L to upregulate GPT2 expression.Transl Oncol. 2022 Jan 10;17:101340. doi:10.1016/j.tranon.2022.101340. Epub ahead of print. PMID: 35021150; PMCID:PMC8752948.

  28. Ting MC, Farmer DT, Teng CS, He J, Chai Y, Crump JG, Maxson RE. (2022) Embryonic requirements for Tcf12 in the development of the mouse coronal suture. Development. 2022 Jan 1;149(1):dev199575. doi: 10.1242/dev.199575. Epub 2022 Jan 4. PMID: 34878091; PMCID: PMC8783042.

  29. Visakan G, Su J, Moradian-Oldak J. (2022) Ameloblastin promotes polarization of ameloblast cell lines in a 3-D cell culture system. Matrix Biol. 2022 Jan;105:72-86. doi: 10.1016/j.matbio.2021.11.002. Epub 2021 Nov 20. PMID:34813898; PMCID: PMC8955733.

  30. Kim DY, Nam J, Chung JS, Kim SW, Shin HJ. (2022) Role of Roflumilast Combined with ESHAP Chemotherapy in Relapsed/Refractory Patients with Diffuse Large B-Cell Lymphoma. Cancer Res Treat. 2022 Jan;54(1):301-313. doi: 10.4143/crt.2020.1371. Epub 2021 Apr 27. PMID: 33940789; PMCID: PMC8756117.

  1. Geng S, Lei Y, Snead ML. (2021) Minimal amelogenin domain for enamel formation. JOM(1989). 2021 Jun;73(6):1696-1704. doi: 10.1007/s11837-021-04687-x. Epub 2021 May 7. PMID: 34456537; PMCID: PMC8386916.

  2. Dinh H.Q, Pan F, Wang G, Q Huang, C Olingy, Z Wu, S Wang, X Xu, X Xu, J He, Q Yang, S Orsulic, M Haro, L Li, G Huang, J Breunig, H Koeffler, C Hedrick, L Xu, Lin DC, E Li. (2021) Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment. Nat Commun. 2021 Dec 17;12(1):7335. doi: 10.1038/s41467-021-27599-5. PMID: 34921160; PMCID: PMC8683407.

  3. Liu M, Choi Y.(2021) A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium. J Periodontal Implant Sci. 2021;51:e47.

  4. Ho AS, Robinson A, Shon W, Laury A, Raedschelders K, Venkatraman V, Holewinski R, Zhang Y, Shiao SL, Chen MM, Mallen-St Clair J, Lin DC, Zumsteg ZS, Van Eyk JE. (2021) Comparative Proteomic Analysis of HPV(+) Oropharyngeal Squamous Cell Carcinoma Recurrence. J Proteome Res. 2021 Nov 30. doi: 10.1021/acs.jproteome.1c00757. Epub ahead of print. PMID: 34846153.

  5. Ho AS, Luu M, Shafqat I, Mallen-St Clair J, Chen MM, Chen Y, Jain M, Ali N, Patio C, Filarski CF, Lin DC, Bankston H, Braunstein GD, Sacks WL, Zumsteg ZS.(2021) Predictive Impact of Metastatic Lymph Node Burden on Distant Metastasis Across Papillary Thyroid Cancer Variants. Thyroid. 2021 Oct;31(10):1549-1557. doi:10.1089/thy.2021.0131. PMID: 34470466.

  6. Xu J, Richard S. (2021) Cellular pathways influenced by protein arginine methylation: Implications for cancer. Mol Cell. 2021 Nov 4;81(21):4357-4368. doi: 10.1016/j.molcel.2021.09.011. Epub 2021 Oct 6. PMID: 34619091; PMCID:PMC8571027.

  7. Lin DC. (2021) A closer look at esophageal cancer through different lenses. EBioMedicine. 2021 Sep;71:103545. doi: 10.1016/j.ebiom.2021.103545. Epub 2021 Aug 19. PMID: 34419929; PMCID: PMC8385164.

  8. Farmer DT, Mlcochova H, Zhou Y, Koelling N, Wang G, Ashley N, Bugacov H, Chen HJ, Parvez R, Tseng KC, Merrill AE, Maxson RE Jr, Wilkie AOM, Crump JG, Twigg SRF. (2021) The developing mouse coronal suture at single-cell resolution. Nat Commun. 2021 Aug 10;12(1):4797. doi: 10.1038/s41467-021-24917-9. PMID: 34376651; PMCID:PMC8355337.

  9. Qin J, Xu J. (2021) Arginine methylation in the epithelial-to-mesenchymal transition. FEBS J. 2021 Aug 6. doi: 10.1111/febs.16152. Epub ahead of print. PMID: 34358413.

  10. Stucky A, Gao L, Sun L, Li SC, Chen X, Park TH, Cai J, Kabeer MH, Zhang X, Sinha UK, Zhong JF. (2021) Evidence for AJUBA-catenin-CDH4-linked differentiation resistance of mesenchymal stem cells implies tumorigenesis and progression of head and neck squamous cell carcinoma: a single-cell transcriptome approach. Blood Genom. 2021;5(1):29-39. doi: 10.46701/BG.2021012021106. PMID: 34368804; PMCID: PMC8346230.

  11. Li LY, Yang Q, Jiang YY, Yang W, Jiang Y, Li X, Hazawa M, Zhou B, Huang GW, Xu XE, Gery S, Zhang Y, Ding LW, Ho AS, Zumsteg ZS, Wang MR, Fullwood MJ, Freedland SJ, Meltzer SJ, Xu LY, Li EM, Koeffler HP, Lin DC. (2021) Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer. Nat Commun. 2021 Jul 16;12(1):4362. doi: 10.1038/s41467-021-24656-x. PMID: 34272396; PMCID:PMC8285542.

  12. Zheng Y, Huang G, Silva TC, Yang Q, Jiang YY, Koeffler HP, Lin DC, Berman BP.(2021) A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes. Nat Commun. 2021 Apr 30;12(1):2485. doi:10.1038/s41467-021-22720-0. Erratum in: Nat Commun. 2021 Jun 28;12(1):4106.PMID: 33931649; PMCID: PMC8087678.

  13. Moradian-Oldak J, George A. (2021) Biomineralization of Enamel and Dentin Mediated by Matrix Proteins. J Dent Res. 2021 Sep;100(10):1020-1029. doi:10.1177/00220345211018405. Epub 2021 Jun 21. PMID: 34151644; PMCID: PMC8381691.

  14. Mukherjee K, Chakraborty A, Sandhu G, Naim S, Bauza Nowotny E, Moradian-Oldak J. (2021) Amelogenin Peptide-Chitosan Hydrogel for Biomimetic Enamel Regrowth. Front. Dent. Med. 2:697544. doi: 10.3389/fdmed.2021.697544

  15. Ma L, Wang J, Ge J, Wang Y, Zhang W, Du Y, Luo J, Li Y, Wang F, Fan G, Chen R, Yao B, Zhao Z, Guo ML, Kim WK, Chai Y, Chen JF. (2021) Reversing neural circuit and behavior deficit in mice exposed to maternal inflammation by Zika virus. EMBO Rep. 2021 Aug 4;22(8):e51978. doi: 10.15252/embr.202051978. Epub 2021 Jul 7. PMID: 34232545; PMCID: PMC8344882.

  16. Lin DC. (2021) Exercise impacts the epigenome of cancer. Prostate Cancer Prostatic Dis. 2021 May 27. doi: 10.1038/s41391-021-00396-3. Epub ahead of print. PMID: 34045658.

  17. Jiang Y, Jiang YY, Lin DC. (2021) Super-enhancer-mediated core regulatory circuitry in human cancer.Comput Struct Biotechnol J. 2021 May 5;19:2790-2795. doi:10.1016/j.csbj.2021.05.006. PMID: 34093993; PMCID: PMC8138668.

  18. Wu Y, Wu H, Zeng J, Pluimer B, Dong S, Xie X, Guo X, Ge T, Liang X, Feng S, Yan Y, Chen JF, Sta Maria N, Ma Q, Gomez-Pinilla F, Zhao Z. (2021) Mild traumatic brain injury induces microvascular injury and accelerates Alzheimer-like pathogenesis in mice. Acta Neuropathol Commun. 2021 Apr 23;9(1):74. doi:10.1186/s40478-021-01178-7. PMID: 33892818; PMCID: PMC8063402.

  19. Bobzin L, Roberts RR, Chen HJ, Crump JG, Merrill AE. (2021) Development and maintenance of tendons and ligaments. Development. 2021 Apr 15;148(8):dev186916. doi: 10.1242/dev.186916. Epub 2021 Apr 16. PMID: 33913478; PMCID: PMC8077520.

  20. Du J, Jing J, Chen S, Yuan Y, Feng J, Ho TV, Sehgal P, Xu J, Jiang X, Chai Y.(2021) Arid1a regulates cell cycle exit of transit-amplifying cells through inhibiting the Aurka-Cdk1 axis in mouse incisor. Development. 2021 Apr 15;148(8):dev198838. doi: 10.1242/dev.198838. Epub 2021 Apr 16. PMID: 33766930; PMCID: PMC8077510.

  21. Du J, Jing J, Yuan Y, Feng J, Han X, Chen S, Li X, Peng W, Xu J, Ho TV, Jiang X, Chai Y. (2021) Arid1a-Plagl1-Hh signaling is indispensable for differentiation-associated cell cycle arrest of tooth root progenitors. Cell Rep. 2021 Apr 6;35(1):108964. doi: 10.1016/j.celrep.2021.108964. PMID: 33826897; PMCID:PMC8132592.

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